LXL04_032705 | RubberDandelionOmics

Gene overview

LXL04_032705

Reference: OH-1004 Chr: Chr07 Coordinates: 28081209-28084549 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

783 bp · LXL04_032705|LXL04_032705|OH1004|cDNA

ATGGCTTCAAGCAACAACAAACTACGCAAACAGAATAACCAAATCCAAAAAGAACGCACCATGAACCCTAAAAAATCCACTTTTGTCGTATCATTCCTGATCATCACCATCTTCGTGATGCTGGCATATTTCTATATGGGGGTTGAGAGAGttgaaaaggatatgataaAGTTCGACCAGACAGGCGGAATTCGTGATATTACAGAACAAGGCCTAAACGGTGAGGAGATGGAAAACCTCGCTCGATTCGCCGTCGAAGA...

CDS

Download CDS FASTA

783 bp · LXL04_032705|LXL04_032705|OH1004|CDS

ATGGCTTCAAGCAACAACAAACTACGCAAACAGAATAACCAAATCCAAAAAGAACGCACCATGAACCCTAAAAAATCCACTTTTGTCGTATCATTCCTGATCATCACCATCTTCGTGATGCTGGCATATTTCTATATGGGGGTTGAGAGAGTTGAAAAGGATATGATAAAGTTCGACCAGACAGGCGGAATTCGTGATATTACAGAACAAGGCCTAAACGGTGAGGAGATGGAAAACCTCGCTCGATTCGCCGTCGAAGA...

Protein

Download Protein FASTA

260 aa · LXL04_032705|LXL04_032705|OH1004|PROTEIN

MASSNNKLRKQNNQIQKERTMNPKKSTFVVSFLIITIFVMLAYFYMGVERVEKDMIKFDQTGGIRDITEQGLNGEEMENLARFAVEEHNKKENTLLQFSRLVKAKEQVVAGMLYHLTLEATDADGNIKVYDTKVWVQQWNNFKQVQEFKAIDDPNVPILELEVQKAGEIHDYTEQGQELEDLARFALEDYSHYVNCIFEFHRVVKVKVKEGQLISGKMYHLTIETKGGTLYEAKVWVKPWKNIKELVEFEAIKAPNVNNW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032705`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032705

Location Chr07:28081209-28084549 (+)

Description Similar to Multicystatin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12490`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At2g40880`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At5g05110`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032705 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0004869 cysteine-type endopeptidase inhibitor activity Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.322

Rank 1 · LXL04_032705 · OH-1004

Endoplasmic reticulum0.220

Rank 2 · LXL04_032705 · OH-1004

Extracellular0.219

Rank 3 · LXL04_032705 · OH-1004

Lysosome / Vacuole0.216

Rank 4 · LXL04_032705 · OH-1004

Nucleus0.129

Rank 5 · LXL04_032705 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00031.28Cystatin69-151 aa

PF16845.12SQAPI73-150 aa

PF00031.28Cystatin167-246 aa

PF16845.12SQAPI177-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032705	`PF00031.28`	Cystatin	69	151	1.9e-24	86.4
LXL04_032705	`PF16845.12`	SQAPI	73	150	2.7e-30	105.3
LXL04_032705	`PF00031.28`	Cystatin	167	246	1.9e-24	86.4
LXL04_032705	`PF16845.12`	SQAPI	177	251	2.7e-30	105.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H0X6`	Arabidopsis thaliana	Cysteine proteinase inhibitor 6	37.073%	Swiss-Prot	moderate database homology
`Q41906`	Arabidopsis thaliana	Cysteine proteinase inhibitor 3	46.341%	Swiss-Prot	weak database homology
`Q8LC76`	Arabidopsis thaliana	Cysteine proteinase inhibitor 7	32.632%	Swiss-Prot	moderate database homology

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