LXL04_032691 | RubberDandelionOmics

Gene overview

LXL04_032691

Reference: OH-1004 Chr: Chr07 Coordinates: 27862546-27863214 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · LXL04_032691|LXL04_032691|OH1004|cDNA

ATGTCGAATCAACTAAGAGCTGTAACCCTCACCCATGTCCGTTACCGAAGAGGAGATCAATTTGGCCATTTCCTGGCATGGATTTCATTAGTCCCGGTCTTCATCAGCCTCGGTGGTTTCATCTGCCATTTCATGTTCCGCCGCGAGCTCCAAGGTATCTTCTTCGCAATAGGCTTACTAATTGCCCAATTCATCAGCGATACCATCAAAATGTTCGTCAAACAAGCCCGACCCGACACCTGCATCATGCTCGAAATGTG...

CDS

Download CDS FASTA

669 bp · LXL04_032691|LXL04_032691|OH1004|CDS

ATGTCGAATCAACTAAGAGCTGTAACCCTCACCCATGTCCGTTACCGAAGAGGAGATCAATTTGGCCATTTCCTGGCATGGATTTCATTAGTCCCGGTCTTCATCAGCCTCGGTGGTTTCATCTGCCATTTCATGTTCCGCCGCGAGCTCCAAGGTATCTTCTTCGCAATAGGCTTACTAATTGCCCAATTCATCAGCGATACCATCAAAATGTTCGTCAAACAAGCCCGACCCGACACCTGCATCATGCTCGAAATGTG...

Protein

Download Protein FASTA

222 aa · LXL04_032691|LXL04_032691|OH1004|PROTEIN

MSNQLRAVTLTHVRYRRGDQFGHFLAWISLVPVFISLGGFICHFMFRRELQGIFFAIGLLIAQFISDTIKMFVKQARPDTCIMLEMCDSHGWPSSHSNYMFFFATYFTLLTYFKLEILFRKQMCLVVFVVWPLALLTMYSRVYLGYHTVAQVFAGASLGLFLGGAWFWVVYCKIKRRFPAIEESSIGRLLYLKDTSHIPNILEFEYENARAARRHPSYKRSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032691`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032691

Location Chr07:27862546-27863214 (-)

Description Similar to LPPG: Lipid phosphate phosphatase gamma

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03080`	Exhibits phosphatidate phosphatase (PAP) activity in vitro.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032691 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0006651 diacylglycerol biosynthetic process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0043048 dolichyl monophosphate biosynthetic process Biological Process

GO:0048868 pollen tube development Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0008195 phosphatidate phosphatase activity Molecular Function

GO:0047874 dolichyldiphosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G03080

hsa:57171

mmu:57170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.713

Rank 1 · LXL04_032691 · OH-1004

Golgi apparatus0.167

Rank 2 · LXL04_032691 · OH-1004

Nucleus0.097

Rank 3 · LXL04_032691 · OH-1004

Cytoplasm0.081

Rank 4 · LXL04_032691 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_032691 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01569.28PAP254-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032691	`PF01569.28`	PAP2	54	171	1e-17	64.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NLA5`	Arabidopsis thaliana	Lipid phosphate phosphatase gamma	65.022%	Swiss-Prot	strong database homology

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