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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_032690
Reference: OH-1004 Chr: Chr07 Coordinates: 27858318-27859748 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1431 bp · LXL04_032690|LXL04_032690|OH1004|cDNA

ATGTGGCCTCCTTTTATCTGGTTAGCTTCTTGCTGTTATTTGCTAAAACATACCTGGAATATCCGTTCTACATTTGTTAGATTGTCTGCCTATACAATATGCTCCGACTTCCAAGGCTTATCTTCGTACACCAAAGTGTTATCTCATCGGCTTAAAAAACTCGGTAAGTTTAACGATACTGAAACCTTACACCACCGGAAGAAAGAACTTAGCAGAAACAGTGCCTTGTTATTTGCCCGCCAATTAAAAGAGTCTGGCTt...

CDS

Download CDS FASTA

1431 bp · LXL04_032690|LXL04_032690|OH1004|CDS

ATGTGGCCTCCTTTTATCTGGTTAGCTTCTTGCTGTTATTTGCTAAAACATACCTGGAATATCCGTTCTACATTTGTTAGATTGTCTGCCTATACAATATGCTCCGACTTCCAAGGCTTATCTTCGTACACCAAAGTGTTATCTCATCGGCTTAAAAAACTCGGTAAGTTTAACGATACTGAAACCTTACACCACCGGAAGAAAGAACTTAGCAGAAACAGTGCCTTGTTATTTGCCCGCCAATTAAAAGAGTCTGGCTT...

Protein

Download Protein FASTA

476 aa · LXL04_032690|LXL04_032690|OH1004|PROTEIN

MWPPFIWLASCCYLLKHTWNIRSTFVRLSAYTICSDFQGLSSYTKVLSHRLKKLGKFNDTETLHHRKKELSRNSALLFARQLKESGFKHDVETYMTIIRSLCHSGMYVRLYNLFNYVIEEDVGIQISHLLDELINEKLIKVVEVLVKVYASIGIYHKAMHTLLETKNRSGLMVSTGTCNFVLNEVIEWDKVDRAESFCEQLKRNGFIPNVYTYGILMKGYRKKGHLVNALHVFKQMEEDGIKPNAFIYGTFIHGLCSKGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_032690
TK1151 IDTkAUNG063400
OH-1004 IDLXL04_032690
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 50.759 / OH-1004 49.160
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_032690
LocationChr07:27858318-27859748 (+)
DescriptionSimilar to At2g26790: Pentatricopeptide repeat-containing protein At2g26790, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26790 Pentatricopeptide repeat-containing protein At2g26790, mitochondrial. No verified direct reference in this release
At1g13800 Putative pentatricopeptide repeat-containing protein At1g13800. No verified direct reference in this release
At5g61990 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release
At1g12700 Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032690 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT2G26790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.850
Rank 1 · LXL04_032690 · OH-1004
Plastid0.071
Rank 2 · LXL04_032690 · OH-1004
Nucleus0.049
Rank 3 · LXL04_032690 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_032690 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_032690 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2175-221 aa
PF23276.3TPR_24176-303 aa
PF13812.13PPR_3199-252 aa
PF12854.14PPR_1205-237 aa
PF01535.27PPR211-241 aa
PF13041.13PPR_2215-256 aa
PF17177.11PPR_long222-359 aa
PF12854.14PPR_1239-270 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_032690PF13041.13PPR_21752215.7e-62206.4
LXL04_032690PF23276.3TPR_241763038.2e-2381.5
LXL04_032690PF13812.13PPR_31992521.7e-29102.4
LXL04_032690PF12854.14PPR_12052378.1e-46154.2
LXL04_032690PF01535.27PPR2112411e-40135.8
LXL04_032690PF13041.13PPR_22152565.7e-62206.4
LXL04_032690PF17177.11PPR_long2223592.2e-1454.1
LXL04_032690PF12854.14PPR_12392708.1e-46154.2
LXL04_032690PF13041.13PPR_22793275.7e-62206.4
LXL04_032690PF01535.27PPR2823101e-40135.8
LXL04_032690PF13812.13PPR_33033511.7e-29102.4
LXL04_032690PF12854.14PPR_13103428.1e-46154.2
LXL04_032690PF13041.13PPR_23133495.7e-62206.4
LXL04_032690PF01535.27PPR3173461e-40135.8
LXL04_032690PF12854.14PPR_13804128.1e-46154.2
LXL04_032690PF13041.13PPR_23844185.7e-62206.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81028Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g26790, mitochondrial32.773%Swiss-Protmoderate database homology
Q9LMH5Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g1380029.353%Swiss-Protweak database homology
Q9FIT7Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g61990, mitochondrial27.151%Swiss-Protweak database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262026.913%Swiss-Protweak database homology
P0C7Q7Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g12700, mitochondrial26.066%Swiss-Protweak database homology

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