LXL04_032659 | RubberDandelionOmics

Gene overview

LXL04_032659

Reference: OH-1004 Chr: Chr07 Coordinates: 27336441-27338418 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1818 bp · LXL04_032659|LXL04_032659|OH1004|cDNA

ATGTGTACCATACCCAAGCTTCATCAACTTCTCACAATCCAACTAATGCTTACCATGTTTGTGTTTGTAAAGTCCCGAGAATTCTACGACTCAGAAAGGGATGCACTGATCCCATTTCGGGACTCCATGAAGTCCAGTTTCAATTTACATGGGAACTGGACTGGTCCTCCATGTCGGACCAATCTGAGCAGGTGGATGGGAATTGGTTGTACCAATTCCCATATAACTCACTTGAGTCTCGAATCCATAAACTTATCAGG...

CDS

Download CDS FASTA

1818 bp · LXL04_032659|LXL04_032659|OH1004|CDS

ATGTGTACCATACCCAAGCTTCATCAACTTCTCACAATCCAACTAATGCTTACCATGTTTGTGTTTGTAAAGTCCCGAGAATTCTACGACTCAGAAAGGGATGCACTGATCCCATTTCGGGACTCCATGAAGTCCAGTTTCAATTTACATGGGAACTGGACTGGTCCTCCATGTCGGACCAATCTGAGCAGGTGGATGGGAATTGGTTGTACCAATTCCCATATAACTCACTTGAGTCTCGAATCCATAAACTTATCAGG...

Protein

Download Protein FASTA

605 aa · LXL04_032659|LXL04_032659|OH1004|PROTEIN

MCTIPKLHQLLTIQLMLTMFVFVKSREFYDSERDALIPFRDSMKSSFNLHGNWTGPPCRTNLSRWMGIGCTNSHITHLSLESINLSGSLPVAFLQNITFLSNLNLNNNSIFGDLPDLTNLTNLESVFLSGNRFSGPIPLDYTKLLKLTILELQDNEITGAIPPFNQESLTSLNLSYNRLSGPIPDTKTLQRFRKSSFDHNIGLCGKPLETLCPFSPPPPNEKKKALKIWSIVLIAAAAAIVPFFGVLLLFCCYKRNQEKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032659`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032659

Location Chr07:27336441-27338418 (+)

Description Similar to PXC1: Leucine-rich repeat receptor-like protein kinase PXC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36570`	Leucine-rich repeat receptor-like protein kinase involved in secondary cell wall formation in xylem fibers.	The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway.2013 · DOI: 10.1186/1471-2229-13-94
`At1g68400`	Probable leucine-rich repeat receptor-like protein kinase At1g68400.	No verified direct reference in this release
`At1g48480`	Probable inactive receptor kinase At1g48480.	No verified direct reference in this release
`At5g35390`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth.2013 · DOI: 10.1093/mp/sss103
`At4g31250`	Probable LRR receptor-like serine/threonine-protein kinase At4g31250.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032659 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0045177 apical part of cell Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G48480

ath:AT1G68400

ath:AT2G36570

ath:AT4G31250

ath:AT5G35390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.888

Rank 1 · LXL04_032659 · OH-1004

Endoplasmic reticulum0.078

Rank 2 · LXL04_032659 · OH-1004

Cytoplasm0.067

Rank 3 · LXL04_032659 · OH-1004

Nucleus0.045

Rank 4 · LXL04_032659 · OH-1004

Lysosome / Vacuole0.020

Rank 5 · LXL04_032659 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr315-590 aa

PF00069.32Pkinase315-588 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032659	`PF07714.24`	PK_Tyr_Ser-Thr	315	590	6.1e-30	105.1
LXL04_032659	`PF00069.32`	Pkinase	315	588	1.9e-29	103.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJQ1`	Arabidopsis thaliana	Leucine-rich repeat receptor-like protein kinase PXC1	35.118%	Swiss-Prot	moderate database homology
`Q9M9C5`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like protein kinase At1g68400	34.181%	Swiss-Prot	moderate database homology
`Q9LP77`	Arabidopsis thaliana	Probable inactive receptor kinase At1g48480	35.174%	Swiss-Prot	moderate database homology
`C0LGU0`	Arabidopsis thaliana	Pollen receptor-like kinase 1	33.281%	Swiss-Prot	moderate database homology
`C0LGR9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At4g31250	32.875%	Swiss-Prot	moderate database homology

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