LXL04_032626 | RubberDandelionOmics

Gene overview

LXL04_032626

Reference: OH-1004 Chr: Chr07 Coordinates: 26413404-26416496 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_032626|LXL04_032626|OH1004|cDNA

ATGCACATCAGTTCCACAGTTGCATCTTTACTACTTTATTTACTCGTCATTTTGCATCCTATTTCGATCTATTCTCAAGAAGTTGAGGATGAGAGAGAGTTTGACTACATAAAAGGAAGTGGAAAAGGACCCGGAAAATGGGGTGAACTACACAAAGAATGGCATGCTTGTAACAATGGTAAAATGCAGTCTCCAATTTATTTGTCGAATAGCAGGGTTGATATCATTCACAAATCAAAGAAGTTATCGAGGAACTACAA...

CDS

Download CDS FASTA

816 bp · LXL04_032626|LXL04_032626|OH1004|CDS

ATGCACATCAGTTCCACAGTTGCATCTTTACTACTTTATTTACTCGTCATTTTGCATCCTATTTCGATCTATTCTCAAGAAGTTGAGGATGAGAGAGAGTTTGACTACATAAAAGGAAGTGGAAAAGGACCCGGAAAATGGGGTGAACTACACAAAGAATGGCATGCTTGTAACAATGGTAAAATGCAGTCTCCAATTTATTTGTCGAATAGCAGGGTTGATATCATTCACAAATCAAAGAAGTTATCGAGGAACTACAA...

Protein

Download Protein FASTA

271 aa · LXL04_032626|LXL04_032626|OH1004|PROTEIN

MHISSTVASLLLYLLVILHPISIYSQEVEDEREFDYIKGSGKGPGKWGELHKEWHACNNGKMQSPIYLSNSRVDIIHKSKKLSRNYKPCTGIVVNRGHDIAVHWEGNAGSIEINGTVYPLKQAHWHSPSEHTINGKRYSLELHMVHQTTDPTAKHKIAVIGVLYKIGKSNPFLSKLVPNITTLVKQDNEQRNAGMIDPREIRMSCRRYYNYIGSLTVPPCTEGVVWTISKKVRTVSLDQVKLLREAVHDHAEKNSRPLQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032626`
TK1151 ID	TkA08G191700
OH-1004 ID	LXL04_032626
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032626

Location Chr07:26413404-26416496 (-)

Description Similar to ACA7: Alpha carbonic anhydrase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08080`	Reversible hydration of carbon dioxide.	No verified direct reference in this release
`At4g20990`	Reversible hydration of carbon dioxide.	No verified direct reference in this release
`At5g56330`	Reversible hydration of carbon dioxide.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032626 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000305 response to oxygen radical Biological Process

GO:0006730 one-carbon metabolic process Biological Process

GO:0006885 regulation of pH Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004089 carbonate dehydratase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0016656 monodehydroascorbate reductase (NADH) activity Molecular Function

GO:0016836 hydro-lyase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08080

ath:AT4G20990

ath:AT5G56330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.660

Rank 1 · LXL04_032626 · OH-1004

Cytoplasm0.109

Rank 2 · LXL04_032626 · OH-1004

Lysosome / Vacuole0.078

Rank 3 · LXL04_032626 · OH-1004

Endoplasmic reticulum0.068

Rank 4 · LXL04_032626 · OH-1004

Cell membrane0.063

Rank 5 · LXL04_032626 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00194.27Carb_anhydrase43-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032626	`PF00194.27`	Carb_anhydrase	43	267	1.4e-42	146.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L817`	Arabidopsis thaliana	Alpha carbonic anhydrase 7	51.429%	Swiss-Prot	strong database homology
`F4JIK2`	Arabidopsis thaliana	Alpha carbonic anhydrase 4	48.699%	Swiss-Prot	moderate database homology
`Q9FM99`	Arabidopsis thaliana	Alpha carbonic anhydrase 8	47.368%	Swiss-Prot	moderate database homology

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