LXL04_032593 | RubberDandelionOmics

Gene overview

LXL04_032593

Reference: OH-1004 Chr: Chr07 Coordinates: 26028717-26035432 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1767 bp · LXL04_032593|LXL04_032593|OH1004|cDNA

ATGGCAGCTGTCTCATATCACTGTACCCTAATACCACTTCCTTACCTCACCACTAAAACCACCAATAAAACAAGTAGTGCTCCGGTTTCCTTCTCCGTCACCGCCGTGTCCAGATCGCTCTCTGCTACATCCACCGCCGGTGTTGTTGCTGCCCCACCGGCACCGGCACTGCTGCAGTTCTCGCCTGACTCACTACAGTATGAACAAGGTAAGGTTGGGGCGGTGCCCGACGGCCGTGTGTCAGATTCGCCGGTGGGTGC...

CDS

Download CDS FASTA

1767 bp · LXL04_032593|LXL04_032593|OH1004|CDS

ATGGCAGCTGTCTCATATCACTGTACCCTAATACCACTTCCTTACCTCACCACTAAAACCACCAATAAAACAAGTAGTGCTCCGGTTTCCTTCTCCGTCACCGCCGTGTCCAGATCGCTCTCTGCTACATCCACCGCCGGTGTTGTTGCTGCCCCACCGGCACCGGCACTGCTGCAGTTCTCGCCTGACTCACTACAGTATGAACAAGGTAAGGTTGGGGCGGTGCCCGACGGCCGTGTGTCAGATTCGCCGGTGGGTGC...

Protein

Download Protein FASTA

588 aa · LXL04_032593|LXL04_032593|OH1004|PROTEIN

MAAVSYHCTLIPLPYLTTKTTNKTSSAPVSFSVTAVSRSLSATSTAGVVAAPPAPALLQFSPDSLQYEQGKVGAVPDGRVSDSPVGAMEYLTNILTSKVYDVAVESPLQHAGKLSERLGVDVWLKREDVQPVFSFKLRGAYNMMAKLSKKQLAEGVICSSAGNHAQGVALAAKKLGCDSVIVMPVTTPRIKWHSVKRLGATVVLEGDSYDEAQAYAKKRAIKENRTFIPPFDHPDVISGQGTVGMEIVRQLQGPIHAIFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032593`
TK1151 ID	TkA08G190430
OH-1004 ID	LXL04_032593
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032593

Location Chr07:26028717-26035432 (-)

Description Similar to TD1: Threonine dehydratase 1 biosynthetic, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10050`	Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032593 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006565 L-serine catabolic process Biological Process

GO:0006566 L-threonine metabolic process Biological Process

GO:0006567 L-threonine catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009097 isoleucine biosynthetic process Biological Process

GO:0009625 response to insect Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0051289 protein homotetramerization Biological Process

GO:0080027 response to herbivore Biological Process

GO:0009507 chloroplast Cellular Component

GO:0003941 L-serine ammonia-lyase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10050

bmj:BMULJ_02699

bmu:Bmul_0562

nau:109229701

sly:100037737

sly:543983

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.797

Rank 1 · LXL04_032593 · OH-1004

Mitochondrion0.164

Rank 2 · LXL04_032593 · OH-1004

Cytoplasm0.084

Rank 3 · LXL04_032593 · OH-1004

Peroxisome0.051

Rank 4 · LXL04_032593 · OH-1004

Nucleus0.037

Rank 5 · LXL04_032593 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00291.32PALP105-391 aa

PF00585.25Thr_dehydrat_C404-494 aa

PF00585.25Thr_dehydrat_C500-585 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032593	`PF00291.32`	PALP	105	391	3.7e-81	273.4
LXL04_032593	`PF00585.25`	Thr_dehydrat_C	404	494	1e-41	141.4
LXL04_032593	`PF00585.25`	Thr_dehydrat_C	500	585	1e-41	141.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSS6`	Arabidopsis thaliana	Threonine dehydratase biosynthetic, chloroplastic	73.258%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card