LXL04_032564 | RubberDandelionOmics

Gene overview

LXL04_032564

Reference: OH-1004 Chr: Chr07 Coordinates: 25608016-25611319 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2301 bp · LXL04_032564|LXL04_032564|OH1004|cDNA

ATGGGAATGCCTGCTGGACGATCGGATTACGCCTTGTTGTCTCAAATTCCCGACGACCATCTCCAACATAATCCTCCGGCGAGGTTTTCCGGCGGCGGTGGATACGAGCCACCGAAGAAGAGCGAAAGAGGAGGATTTGACTGGGAATCGATGAACTTGACTACCGATCAGCGGATGCAGCAGAATTGGCAGTCGGCATTACAGAGACAGTCGAGTGGTAGTAGCTTTGCTGAAAGCTCGTTATCTGGTGATTGCTTCGT...

CDS

Download CDS FASTA

2301 bp · LXL04_032564|LXL04_032564|OH1004|CDS

ATGGGAATGCCTGCTGGACGATCGGATTACGCCTTGTTGTCTCAAATTCCCGACGACCATCTCCAACATAATCCTCCGGCGAGGTTTTCCGGCGGCGGTGGATACGAGCCACCGAAGAAGAGCGAAAGAGGAGGATTTGACTGGGAATCGATGAACTTGACTACCGATCAGCGGATGCAGCAGAATTGGCAGTCGGCATTACAGAGACAGTCGAGTGGTAGTAGCTTTGCTGAAAGCTCGTTATCTGGTGATTGCTTCGT...

Protein

Download Protein FASTA

766 aa · LXL04_032564|LXL04_032564|OH1004|PROTEIN

MGMPAGRSDYALLSQIPDDHLQHNPPARFSGGGGYEPPKKSERGGFDWESMNLTTDQRMQQNWQSALQRQSSGSSFAESSLSGDCFVPSLSAATSSGGGDHDAYFHLADGGDGEALGWELPDAGGSGVVGGVYSSLKSWAQQTEESYQLQLALALRLSSEATCADDPNIVDSVSSTYSAEALSHRFWANGCLSYSDKVPDGFYFIHGMDPYVWSVCSNPQESGRIPSLESLKVVNSATESAFEVIVINRLNDPSLIELQN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032564`
TK1151 ID	TkA08G188550
OH-1004 ID	LXL04_032564
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032564

Location Chr07:25608016-25611319 (+)

Description Similar to CTR1: Serine/threonine-protein kinase CTR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03730`	Acts as a negative regulator in the ethylene response pathway.	CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis.2012 · DOI: 10.1073/pnas.1214848109 Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005143 CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases.1993 · DOI: 10.1016/0092-8674(93)90119-b
`At1g73660`	Acts as a negative regulator of salt tolerance.	The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9306-8 SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis.2014 · DOI: 10.1111/tpj.12404
`At1g08720`	MAPKKK serine/threonine-protein kinase involved in the regulation of a MAP kinase cascade (probably including MPK3 and MPK6) that negatively regulates salicylic acid- (SA-) dependent defense responses, abscisic acid (ABA) signaling, and ethylene-induced senescence.	Negative regulation of defense responses in plants by a conserved MAPKK kinase.2001 · DOI: 10.1073/pnas.98.1.373 Overexpression of a kinase-deficient form of the EDR1 gene enhances powdery mildew resistance and ethylene-induced senescence in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01482.x Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase.2005 · DOI: 10.1104/pp.105.060400 Costs and benefits of priming for defense in Arabidopsis.2006 · DOI: 10.1073/pnas.0510213103 Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling.2008 · DOI: 10.1104/pp.108.127605 Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.062158 The KEEP ON GOING protein of Arabidopsis recruits the ENHANCED DISEASE RESISTANCE1 protein to trans-Golgi network/early endosome vesicles.2011 · DOI: 10.1104/pp.110.171785 Arabidopsis ENHANCED DISEASE RESISTANCE 1 is required for pathogen-induced expression of plant defensins in nonhost resistance, and acts through interference of MYC2-mediated repressor function.2011 · DOI: 10.1111/j.1365-313x.2011.04651.x Negative regulation of defence signalling pathways by the EDR1 protein kinase.2011 · DOI: 10.1111/j.1364-3703.2011.00708.x An Arabidopsis mutant with enhanced resistance to powdery mildew.1998 · DOI: 10.1105/tpc.10.6.947
`At4g35780`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032564 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000165 MAPK cascade Biological Process

GO:0001666 response to hypoxia Biological Process

GO:0002229 defense response to oomycetes Biological Process

GO:0007165 signal transduction Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009686 gibberellin biosynthetic process Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009744 response to sucrose Biological Process

KEGG gene cross-reference

ath:AT1G08720

ath:AT1G73660

ath:AT5G03730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.475

Rank 1 · LXL04_032564 · OH-1004

Cell membrane0.313

Rank 2 · LXL04_032564 · OH-1004

Nucleus0.296

Rank 3 · LXL04_032564 · OH-1004

Golgi apparatus0.091

Rank 4 · LXL04_032564 · OH-1004

Lysosome / Vacuole0.068

Rank 5 · LXL04_032564 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14381.13EDR1_CTR1_ARMC3_pept178-384 aa

PF07714.24PK_Tyr_Ser-Thr493-746 aa

PF00069.32Pkinase493-744 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032564	`PF14381.13`	EDR1_CTR1_ARMC3_pept	178	384	1e-74	251.4
LXL04_032564	`PF07714.24`	PK_Tyr_Ser-Thr	493	746	2.7e-67	227.5
LXL04_032564	`PF00069.32`	Pkinase	493	744	2.5e-56	191.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q05609`	Arabidopsis thaliana	Serine/threonine-protein kinase CTR1	58.123%	Swiss-Prot	strong database homology
`Q9C9U5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase SIS8	63.569%	Swiss-Prot	weak database homology
`Q9FPR3`	Arabidopsis thaliana	Serine/threonine-protein kinase EDR1	63.396%	Swiss-Prot	weak database homology
`Q8RWL6`	Arabidopsis thaliana	Serine/threonine-protein kinase STY17	39.146%	Swiss-Prot	weak database homology

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