LXL04_032544 | RubberDandelionOmics

Gene overview

LXL04_032544

Reference: OH-1004 Chr: Chr07 Coordinates: 24993056-24996391 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2424 bp · LXL04_032544|LXL04_032544|OH1004|cDNA

ATGGAGTCTCAAAGATCTAATCTTCAAGTAGTTTCCCTAAATGTCGATGACGATGAAATATTGGTTTCCAAGTTCGATTGTTCAGTCGACAATCACTTTCACGCGATGGATAAAATTGCTACACTCTCCGGAGAATCAGAACCACAAACCGACATTCCACGATTCTCTTCTTCCGTTACTTTCTTAAGAGAATGGAGAAACTTCTGTTACCAACCTCGAGCTGTTAGGTTTGCTTGTGAAAAGGACAAAGATGTCGCACC...

CDS

Download CDS FASTA

2424 bp · LXL04_032544|LXL04_032544|OH1004|CDS

ATGGAGTCTCAAAGATCTAATCTTCAAGTAGTTTCCCTAAATGTCGATGACGATGAAATATTGGTTTCCAAGTTCGATTGTTCAGTCGACAATCACTTTCACGCGATGGATAAAATTGCTACACTCTCCGGAGAATCAGAACCACAAACCGACATTCCACGATTCTCTTCTTCCGTTACTTTCTTAAGAGAATGGAGAAACTTCTGTTACCAACCTCGAGCTGTTAGGTTTGCTTGTGAAAAGGACAAAGATGTCGCACC...

Protein

Download Protein FASTA

807 aa · LXL04_032544|LXL04_032544|OH1004|PROTEIN

MESQRSNLQVVSLNVDDDEILVSKFDCSVDNHFHAMDKIATLSGESEPQTDIPRFSSSVTFLREWRNFCYQPRAVRFACEKDKDVAPQINLPQFSSALVPKDSSYGNKDFVMNVGGHVWALDWCPKLHQNSNTNINVEFIAVAAHPPESSYHKIGAPLTGRGLIQIWCMLNSCTKEQDKLPLVKVKPKKSSQNDESTDPEIDEPKKKRGRPKKITVPNQQDIIPLVKVKPKKSSQNDESTDHEIDEPKKKRGRPKKITVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032544`
TK1151 ID	TkA08G185810
OH-1004 ID	LXL04_032544
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_032544`
Location	Chr07:24993056-24996391 (+)
Description	Similar to GTF3C2: General transcription factor 3C polypeptide 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032544` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0042791 5S class rRNA transcription by RNA polymerase III Biological Process GO:0042797 tRNA transcription by RNA polymerase III Biological Process GO:0000127 transcription factor TFIIIC complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0000995 RNA polymerase III general transcription initiation factor activity Molecular Function GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference	hsa:2976 mmu:71752 pon:100174311 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.874

Rank 1 · LXL04_032544 · OH-1004

Cytoplasm0.179

Rank 2 · LXL04_032544 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_032544 · OH-1004

Mitochondrion0.020

Rank 4 · LXL04_032544 · OH-1004

Endoplasmic reticulum0.019

Rank 5 · LXL04_032544 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23381.2Beta-prop_IFT122_1st457-633 aa

PF25174.2Beta-prop_THOC3459-583 aa

PF23414.2Beta-prop_EML_2518-644 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032544	`PF23381.2`	Beta-prop_IFT122_1st	457	633	8.9e-08	32.5
LXL04_032544	`PF25174.2`	Beta-prop_THOC3	459	583	1.4e-07	31.6
LXL04_032544	`PF23414.2`	Beta-prop_EML_2	518	644	2.8e-06	27.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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