LXL04_032460 | RubberDandelionOmics

Gene overview

LXL04_032460

Reference: OH-1004 Chr: Chr07 Coordinates: 23279330-23282030 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1665 bp · LXL04_032460|LXL04_032460|OH1004|cDNA

ATGGCTTCCTCCCTTCCATTTTTAGCCAACAGAAACTATGGTTTGCCTTCATGCATGGTTTCAAACCATCCTAGTGATGGTTGTTCCTTTGGGCAACCTATTTTCCCGAAAAATAAGAGGAGTAGGGAAAAAAGTATTGTGAGTGTTGCAACTGATCTGCCTGTGGTTGTCCAACCACCGTTGCGGAAAGATTTAGCACAAGACCGGAAGTTGGCGGCATGGACTAGCATCCGCCAGGATCGGTGGGAAGGAGAGCTTCG...

CDS

Download CDS FASTA

1665 bp · LXL04_032460|LXL04_032460|OH1004|CDS

ATGGCTTCCTCCCTTCCATTTTTAGCCAACAGAAACTATGGTTTGCCTTCATGCATGGTTTCAAACCATCCTAGTGATGGTTGTTCCTTTGGGCAACCTATTTTCCCGAAAAATAAGAGGAGTAGGGAAAAAAGTATTGTGAGTGTTGCAACTGATCTGCCTGTGGTTGTCCAACCACCGTTGCGGAAAGATTTAGCACAAGACCGGAAGTTGGCGGCATGGACTAGCATCCGCCAGGATCGGTGGGAAGGAGAGCTTCG...

Protein

Download Protein FASTA

554 aa · LXL04_032460|LXL04_032460|OH1004|PROTEIN

MASSLPFLANRNYGLPSCMVSNHPSDGCSFGQPIFPKNKRSREKSIVSVATDLPVVVQPPLRKDLAQDRKLAAWTSIRQDRWEGELRVDGEIPQWLHGTYLRNGPGLWHIGDYNFRHLFDGYATLVGLHFDNGHLTMGHRQIESDAYKAARKSNKLCYREFSEVPKHDNFLAYIGDLANLFSGASLTDNANTGVVQLGDGRVVCLTETIKGSIVIDPINLDTVGKFEYSDSLGGLVHSAHPIVTESEFLTLLPDLLNPGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032460`
TK1151 ID	TkA08G176650
OH-1004 ID	LXL04_032460
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032460

Location Chr07:23279330-23282030 (-)

Description Similar to CCD8B: Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g32810`	May cleave a CCD7-derived C₂₇ carotenoid derivative in strigolactone biosynthesis.	MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea.2003 · DOI: 10.1101/gad.256603 The biochemical characterization of two carotenoid cleavage enzymes from Arabidopsis indicates that a carotenoid-derived compound inhibits lateral branching.2004 · DOI: 10.1074/jbc.m409004200 Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family.2006 · DOI: 10.1111/j.1365-313x.2006.02666.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0746400`	Involved in strigolactones biosynthesis by cleaving the C(27) 9-cis-10'-apo-beta-carotenal produced by CCD7.	No verified direct reference in this release
`Os01g0566500`	May be involved in strigolactones biosynthesis.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032460 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009635 response to herbicide Biological Process

GO:0009733 response to auxin Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0016119 carotene metabolic process Biological Process

GO:0016121 carotene catabolic process Biological Process

GO:0016124 xanthophyll catabolic process Biological Process

GO:0042572 retinol metabolic process Biological Process

GO:0042574 retinal metabolic process Biological Process

GO:0062172 lutein catabolic process Biological Process

GO:1901176 lycopene catabolic process Biological Process

KEGG gene cross-reference

ag:CAO85888

ath:AT4G32810

dosa:Os01g0566500

dosa:Os01g0746400

osa:4327933

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · LXL04_032460 · OH-1004

Mitochondrion0.036

Rank 2 · LXL04_032460 · OH-1004

Cytoplasm0.022

Rank 3 · LXL04_032460 · OH-1004

Peroxisome0.019

Rank 4 · LXL04_032460 · OH-1004

Cell membrane0.018

Rank 5 · LXL04_032460 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03055.22RPE6585-552 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032460	`PF03055.22`	RPE65	85	552	4.8e-101	339.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY26`	Arabidopsis thaliana	Carotenoid cleavage dioxygenase 8, chloroplastic	64.326%	Swiss-Prot	strong database homology
`Q8LIY8`	Oryza sativa subsp. japonica	Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic	77.066%	Swiss-Prot	strong database homology
`Q93VD5`	Oryza sativa subsp. japonica	Carotenoid cleavage dioxygenase 8 homolog A, chloroplastic	65.173%	Swiss-Prot	strong database homology

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