Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1518 bp · LXL04_032433|LXL04_032433|OH1004|cDNA
ATGGATGATCGTCAGCAGAGGCTTCTAGAGAGAGAACTGTATCAAATCGAACAAATAAGGCAGCTCGATTCCGAGGAATTGGAGATCGAAGAGGTTGAACACGGCCACCAGTCATCCGAAGACGATCAATTCGATGACCGTGTCTATGGAGGGGCTTCTGCATCTGGTGGTTATACCTTCAATACATCTTTGGCTTCAATGCATTCTTATCTTGGTGAGGTTGAAGATACCCACAACAGACTTGCTTTCTTGGAGGGTGG...
1518 bp · LXL04_032433|LXL04_032433|OH1004|CDS
ATGGATGATCGTCAGCAGAGGCTTCTAGAGAGAGAACTGTATCAAATCGAACAAATAAGGCAGCTCGATTCCGAGGAATTGGAGATCGAAGAGGTTGAACACGGCCACCAGTCATCCGAAGACGATCAATTCGATGACCGTGTCTATGGAGGGGCTTCTGCATCTGGTGGTTATACCTTCAATACATCTTTGGCTTCAATGCATTCTTATCTTGGTGAGGTTGAAGATACCCACAACAGACTTGCTTTCTTGGAGGGTGG...
Protein
Download Protein FASTA505 aa · LXL04_032433|LXL04_032433|OH1004|PROTEIN
MDDRQQRLLERELYQIEQIRQLDSEELEIEEVEHGHQSSEDDQFDDRVYGGASASGGYTFNTSLASMHSYLGEVEDTHNRLAFLEGGVILHVPLFYLEGVVLFPEATLPLRVIQPNFIAAVDRALRQVEAPYTIGVVRVYRDSDDGRIRFATTGTTAEIRQYRRLEDGSINVVTRGQQRFRLRRRWIELEGAPCGEIQIIEEDLPLRTPRDAVGQLPPLKNLSHSKPPPHPDHDSDAMSDDSFESELSLTERRLHTSALV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032433 |
|---|---|
| TK1151 ID | TkA08G175090 |
| OH-1004 ID | LXL04_032433 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032433 |
|---|---|
| Location | Chr07:22821710-22824350 (-) |
| Description | Similar to crbn: Protein cereblon |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0016567 protein ubiquitination Biological Process GO:0030177 positive regulation of Wnt signaling pathway Biological Process GO:0031333 negative regulation of protein-containing complex assembly Biological Process GO:0031334 positive regulation of protein-containing complex assembly Biological Process GO:0034766 negative regulation of monoatomic ion transmembrane transport Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0016020 membrane Cellular Component GO:0031464 Cul4A-RING E3 ubiquitin ligase complex Cellular Component |
| KEGG gene cross-reference | bta:511585 dre:445491 hsa:51185 pon:100174633 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02190.23LON_substr_bdg92-395 aaPF03226.22Yippee-Mis18401-498 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032433 | PF02190.23 | LON_substr_bdg | 92 | 395 | 2.2e-31 | 110.0 |
| LXL04_032433 | PF03226.22 | Yippee-Mis18 | 401 | 498 | 1.5e-06 | 29.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.