LXL04_032384 | RubberDandelionOmics

Gene overview

LXL04_032384

Reference: OH-1004 Chr: Chr07 Coordinates: 21614998-21617777 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1548 bp · LXL04_032384|LXL04_032384|OH1004|cDNA

ATGAGCGTATTGCTTATTTTCCCTATGTTGTTACATTTGTTACTTGTGGTCTGTTTTAGCTCTATAATGGTTGTTTCAGCAAGTGTTGTGGGTTTGAGTGTTGTCGAGGGCAGTGTAAACATAAACGGGACGGATTCCATTGGTTTCATAGATGAAGACTTCATATGTGCAACTTTAGATTGGTGGCCACCAGAAAAATGCGATTATGGAAGTTGTAGCTGGGGAAATGCTTCTCTTCTCAACCTGGACCTAAACAacaa...

CDS

Download CDS FASTA

1548 bp · LXL04_032384|LXL04_032384|OH1004|CDS

ATGAGCGTATTGCTTATTTTCCCTATGTTGTTACATTTGTTACTTGTGGTCTGTTTTAGCTCTATAATGGTTGTTTCAGCAAGTGTTGTGGGTTTGAGTGTTGTCGAGGGCAGTGTAAACATAAACGGGACGGATTCCATTGGTTTCATAGATGAAGACTTCATATGTGCAACTTTAGATTGGTGGCCACCAGAAAAATGCGATTATGGAAGTTGTAGCTGGGGAAATGCTTCTCTTCTCAACCTGGACCTAAACAACAA...

Protein

Download Protein FASTA

515 aa · LXL04_032384|LXL04_032384|OH1004|PROTEIN

MSVLLIFPMLLHLLLVVCFSSIMVVSASVVGLSVVEGSVNINGTDSIGFIDEDFICATLDWWPPEKCDYGSCSWGNASLLNLDLNNKILFNAIKAFSPLKVRLGGTLQDKVMYQRSGDQEPCDNFTKNTSAIFGITNGCLTMSRWDQLNIFFKNSGAKVVFGLNALTGREIDSNGTALGSWNSSNAEALIRYTASNGYVIYGWELGNELSGKGIGTSVTARQYAADTISLQNLVQNIYEGFQEKPIVIGPGGFFEANWFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032384`
TK1151 ID	TkA08G170700
OH-1004 ID	LXL04_032384
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.565 / OH-1004 49.126 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032384

Location Chr07:21614998-21617777 (-)

Description Similar to At5g34940: Heparanase-like protein 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g34940`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g61250`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g07830`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032384 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0030214 hyaluronan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

GO:0031012 extracellular matrix Cellular Component

GO:0004566 beta-glucuronidase activity Molecular Function

GO:0016740 transferase activity Molecular Function

GO:0033906 hyaluronoglucuronidase activity Molecular Function

KEGG gene cross-reference

ag:BAA97804

ath:AT5G07830

ath:AT5G34940

ath:AT5G61250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.290

Rank 1 · LXL04_032384 · OH-1004

Cell membrane0.175

Rank 2 · LXL04_032384 · OH-1004

Lysosome / Vacuole0.154

Rank 3 · LXL04_032384 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_032384 · OH-1004

Cytoplasm0.088

Rank 5 · LXL04_032384 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03662.21Glyco_hydro_79n37-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032384	`PF03662.21`	Glyco_hydro_79n	37	346	6.4e-145	482.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZP1`	Arabidopsis thaliana	Heparanase-like protein 3	52.757%	Swiss-Prot	strong database homology
`Q8L608`	Arabidopsis thaliana	Heparanase-like protein 2	42.086%	Swiss-Prot	moderate database homology
`Q9FF10`	Arabidopsis thaliana	Heparanase-like protein 1	40.816%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card