LXL04_032342 | RubberDandelionOmics

Gene overview

LXL04_032342

Reference: OH-1004 Chr: Chr07 Coordinates: 21012561-21013883 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

519 bp · LXL04_032342|LXL04_032342|OH1004|cDNA

atgaGTTTCATTCATGTCGTCTTCTGCTTCAACATCATGGCGTTCATCATTGTGCTATCTCATTTCCAGTATCTTTCAGGTTCATATTCATTAAACAAGTATTTGCCTGGTTTCAATGGGACGAAAGATCATAACACAAGTATAGCAAATTCAGATGCGAAATTACCAGAAGAGGCATTCCACACTCATAGAAAGCTTCTTTTCCAAGGTTCATCTTGTACAGCCAGAGATCTGAGCATTTCACAGAGTAAAGGGTCAAC...

CDS

Download CDS FASTA

519 bp · LXL04_032342|LXL04_032342|OH1004|CDS

ATGAGTTTCATTCATGTCGTCTTCTGCTTCAACATCATGGCGTTCATCATTGTGCTATCTCATTTCCAGTATCTTTCAGGTTCATATTCATTAAACAAGTATTTGCCTGGTTTCAATGGGACGAAAGATCATAACACAAGTATAGCAAATTCAGATGCGAAATTACCAGAAGAGGCATTCCACACTCATAGAAAGCTTCTTTTCCAAGGTTCATCTTGTACAGCCAGAGATCTGAGCATTTCACAGAGTAAAGGGTCAAC...

Protein

Download Protein FASTA

172 aa · LXL04_032342|LXL04_032342|OH1004|PROTEIN

MSFIHVVFCFNIMAFIIVLSHFQYLSGSYSLNKYLPGFNGTKDHNTSIANSDAKLPEEAFHTHRKLLFQGSSCTARDLSISQSKGSTTGIPQYIVQIVNTCVSSSQCAPSNIHLHCGWFASARIVNPRFFKRLSYDDCLVNGGQMLKTGQMISFSYSNSFMYPISLKHARFC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032342`
TK1151 ID	TkA08G168430
OH-1004 ID	LXL04_032342
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032342

Location Chr07:21012561-21013883 (-)

Description Similar to TDL1: TPD1 protein homolog 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32583`	TPD1 protein homolog 1.	No verified direct reference in this release
`At4g24972`	Involved in cell specification during anther and pollen development.	Tapetum determinant1 is required for cell specialization in the Arabidopsis anther.2003 · DOI: 10.1105/tpc.016618 Overexpression of TAPETUM DETERMINANT1 alters the cell fates in the Arabidopsis carpel and tapetum via genetic interaction with excess microsporocytes1/extra sporogenous cells.2005 · DOI: 10.1104/pp.105.063529 Signaling of cell fate determination by the TPD1 small protein and EMS1 receptor kinase.2008 · DOI: 10.1073/pnas.0708795105

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0472500`	Involved in cell specification during anther development.	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers.2008 · DOI: 10.1111/j.1365-313x.2008.03426.x MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther.2012 · DOI: 10.1111/j.1469-8137.2012.04270.x
`Os10g0207500`	May play a role during anther development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032342 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001709 cell fate determination Biological Process

GO:0009408 response to heat Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0010234 anther wall tapetum cell fate specification Biological Process

GO:0048653 anther development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G32583

ath:AT4G24972

dosa:Os10g0207500

dosa:Os12g0472500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.560

Rank 1 · LXL04_032342 · OH-1004

Cell membrane0.134

Rank 2 · LXL04_032342 · OH-1004

Endoplasmic reticulum0.130

Rank 3 · LXL04_032342 · OH-1004

Cytoplasm0.090

Rank 4 · LXL04_032342 · OH-1004

Nucleus0.052

Rank 5 · LXL04_032342 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24068.2TPD1_C76-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032342	`PF24068.2`	TPD1_C	76	171	4.6e-33	113.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1G3T1`	Arabidopsis thaliana	TPD1 protein homolog 1	43.448%	Swiss-Prot	moderate database homology
`Q6TLJ2`	Arabidopsis thaliana	Protein TAPETUM DETERMINANT 1	46.465%	Swiss-Prot	moderate database homology
`Q2QR54`	Oryza sativa subsp. japonica	TPD1 protein homolog 1A	41.584%	Swiss-Prot	moderate database homology
`Q8S6P9`	Oryza sativa subsp. japonica	TPD1 protein homolog 1B	31.953%	Swiss-Prot	moderate database homology

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