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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_032319
Reference: OH-1004 Chr: Chr07 Coordinates: 20436206-20439280 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2340 bp · LXL04_032319|LXL04_032319|OH1004|cDNA

ATATCAATGGAGACTCAAACTAGACCTGCAACTTCTAAGTTTTTCTTCCTTCTTCCTCGGAATTTGCTGTTAGCATATCAAAGCTTTGGCGTTGTATACGGAGACTTGAGCACTTCACCTCTTTACGTCTTCAGAAGCGTGTTTGCCGTCTCTCTCAAACACCATCAAAATCCCGAAGTTATTTTTGGGGCATTTTCCTTAATCTTCTGGGCCTTAACTTTAATCCCACTCCTAAAATACACATGTATTATATTAAGTGC...

CDS

Download CDS FASTA

2334 bp · LXL04_032319|LXL04_032319|OH1004|CDS

ATGGAGACTCAAACTAGACCTGCAACTTCTAAGTTTTTCTTCCTTCTTCCTCGGAATTTGCTGTTAGCATATCAAAGCTTTGGCGTTGTATACGGAGACTTGAGCACTTCACCTCTTTACGTCTTCAGAAGCGTGTTTGCCGTCTCTCTCAAACACCATCAAAATCCCGAAGTTATTTTTGGGGCATTTTCCTTAATCTTCTGGGCCTTAACTTTAATCCCACTCCTAAAATACACATGTATTATATTAAGTGCAGATGA...

Protein

Download Protein FASTA

777 aa · LXL04_032319|LXL04_032319|OH1004|PROTEIN

METQTRPATSKFFFLLPRNLLLAYQSFGVVYGDLSTSPLYVFRSVFAVSLKHHQNPEVIFGAFSLIFWALTLIPLLKYTCIILSADDSGEGGTFALYSLICRHARFNMLPNQQAADEDLSTYKYGSTGQPPSSSSSSSLKRFLEKHKKSRTALICVVLLGASMVIGDGVITPAISVLSAVSALKVEGEGVDITHGQVVALACLILVGLFALQHFGTHRVAIVFAPVIILWLLSIFSIGIYNTIHWNPKIVHAFSPHYIIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_032319
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_032319
LocationChr07:20436206-20439280 (-)
DescriptionSimilar to POT4: Potassium transporter 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02050 High-affinity potassium transporter.
AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity.1998 · DOI: 10.1105/tpc.10.1.51
At4g23640 High-affinity potassium transporter required for tip growth of root hairs.
TRH1 encodes a potassium transporter required for tip growth in Arabidopsis root hairs.2001 · DOI: 10.1105/tpc.13.1.139

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0669700 High-affinity potassium transporter.
Inventory and functional characterization of the HAK potassium transporters of rice.2002 · DOI: 10.1104/pp.007781
Os01g0935500 High-affinity potassium transporter.
Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells.2011 · DOI: 10.1016/j.jbiosc.2010.10.014
Os01g0369300 High-affinity potassium transporter. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032319 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006813 potassium ion transport Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009932 cell tip growth Biological Process
GO:0048825 cotyledon development Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0015079 potassium ion transmembrane transporter activity Molecular Function
GO:0015081 sodium ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G02050
ath:AT4G23640
dosa:Os01g0369300
dosa:Os01g0935500
dosa:Os07g0669700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.525
Rank 1 · LXL04_032319 · OH-1004
Lysosome / Vacuole0.276
Rank 2 · LXL04_032319 · OH-1004
Cytoplasm0.112
Rank 3 · LXL04_032319 · OH-1004
Endoplasmic reticulum0.097
Rank 4 · LXL04_032319 · OH-1004
Golgi apparatus0.074
Rank 5 · LXL04_032319 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02705.23K_trans21-499 aa
PF22776.1K_trans_C529-775 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_032319PF02705.23K_trans214991.2e-156522.6
LXL04_032319PF22776.1K_trans_C5297752.1e-2590.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LD18Arabidopsis thalianaPotassium transporter 468.564%Swiss-Protstrong database homology
Q9FE38Arabidopsis thalianaPotassium transporter 355.901%Swiss-Protstrong database homology
Q8H3P9Oryza sativa subsp. japonicaPotassium transporter 765.796%Swiss-Protstrong database homology
Q942X8Oryza sativa subsp. japonicaProbable potassium transporter 262.159%Swiss-Protstrong database homology
Q5ZC87Oryza sativa subsp. japonicaProbable potassium transporter 358.997%Swiss-Protstrong database homology

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