LXL04_032307 | RubberDandelionOmics

Gene overview

LXL04_032307

Reference: OH-1004 Chr: Chr07 Coordinates: 20171877-20173499 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1623 bp · LXL04_032307|LXL04_032307|OH1004|cDNA

ATGAAGAAGTCTCACTCTCACATGAGCTCTTCTGTCTTCCTCCTTGTTCTAGCTCTTTCCTTTTATAATGCATGGGCAACCTTATCTTCCCTTGTTGATGTTACACCAGGTACTGAAAATTTCATAAGTTGCACACAATCCAACTCCAACAATGTTAACTCCACCTCTCGGCTCATATTCACCCCTGTCAATGCTTCTTTCATTCCCATTTGGCAAGTTGCGGTGCAAAACACAAGGTTCCTTAAACCCTCCACTCCAAA...

CDS

Download CDS FASTA

1623 bp · LXL04_032307|LXL04_032307|OH1004|CDS

ATGAAGAAGTCTCACTCTCACATGAGCTCTTCTGTCTTCCTCCTTGTTCTAGCTCTTTCCTTTTATAATGCATGGGCAACCTTATCTTCCCTTGTTGATGTTACACCAGGTACTGAAAATTTCATAAGTTGCACACAATCCAACTCCAACAATGTTAACTCCACCTCTCGGCTCATATTCACCCCTGTCAATGCTTCTTTCATTCCCATTTGGCAAGTTGCGGTGCAAAACACAAGGTTCCTTAAACCCTCCACTCCAAA...

Protein

Download Protein FASTA

540 aa · LXL04_032307|LXL04_032307|OH1004|PROTEIN

MKKSHSHMSSSVFLLVLALSFYNAWATLSSLVDVTPGTENFISCTQSNSNNVNSTSRLIFTPVNASFIPIWQVAVQNTRFLKPSTPKPSVIVTPVDETLIQTVLFCAKKHGYAIRIRSGGHDYEGLSYSADVPFVMLDFTNTRSIDVDVAKRTAWVQPGAVLGELYYSISQKTDTLYFPAGVCPTVGVGGYMGGGGYGNLLRKYGTAADNVVDVRFMDVNGNILDKISMGKDLFWAIRGGGASSFGIVLAWKLRLVPVPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032307`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032307

Location Chr07:20171877-20173499 (+)

Description Similar to At5g44400: Berberine bridge enzyme-like 26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44400`	Berberine bridge enzyme-like 26.	No verified direct reference in this release
`At5g44390`	Berberine bridge enzyme-like 25.	No verified direct reference in this release
`At4g20820`	Berberine bridge enzyme-like 18.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032307 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:1901696 cannabinoid biosynthetic process Biological Process

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0050328 tetrahydroberberine oxidase activity Molecular Function

GO:0071949 FAD binding Molecular Function

GO:0102778 delta9-tetrahydrocannabinolate synthase activity Molecular Function

KEGG gene cross-reference

ag:ADY15026

ag:BAC41356

ath:AT4G20820

ath:AT5G44390

ath:AT5G44400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.493

Rank 1 · LXL04_032307 · OH-1004

Lysosome / Vacuole0.141

Rank 2 · LXL04_032307 · OH-1004

Endoplasmic reticulum0.127

Rank 3 · LXL04_032307 · OH-1004

Cytoplasm0.120

Rank 4 · LXL04_032307 · OH-1004

Cell membrane0.094

Rank 5 · LXL04_032307 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_488-224 aa

PF08031.18BBE483-538 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032307	`PF01565.29`	FAD_binding_4	88	224	1.5e-24	87.0
LXL04_032307	`PF08031.18`	BBE	483	538	6.4e-17	62.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKU8`	Arabidopsis thaliana	Berberine bridge enzyme-like 26	42.991%	Swiss-Prot	moderate database homology
`Q9FKU9`	Arabidopsis thaliana	Berberine bridge enzyme-like 25	43.068%	Swiss-Prot	moderate database homology
`Q9SVG5`	Arabidopsis thaliana	Berberine bridge enzyme-like 18	44.466%	Swiss-Prot	moderate database homology

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