Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1512 bp · LXL04_032287|LXL04_032287|OH1004|cDNA
ATGCCGTTGCTGGATTCCTTCACGGCAATATCGTTGCTACTGCTTGTTAGGGTTTTATGCATTCAGGCTTCGGTGCATAACTACGCCGGAGAAAAGTTCTCCAGAAAGGGAAATGCATTTGTAGTCCATGGAGGAAGTGAAGGAATCTATTACTCTCATCCTAACCTCAATGAGTCTTCCGCATCTTCCAATGGCGATGCCTATATACGTTTTGAAAAGATCACATTCCAAAGGACTCAAGAGGTTGCAAACATGAGCAA...
1512 bp · LXL04_032287|LXL04_032287|OH1004|CDS
ATGCCGTTGCTGGATTCCTTCACGGCAATATCGTTGCTACTGCTTGTTAGGGTTTTATGCATTCAGGCTTCGGTGCATAACTACGCCGGAGAAAAGTTCTCCAGAAAGGGAAATGCATTTGTAGTCCATGGAGGAAGTGAAGGAATCTATTACTCTCATCCTAACCTCAATGAGTCTTCCGCATCTTCCAATGGCGATGCCTATATACGTTTTGAAAAGATCACATTCCAAAGGACTCAAGAGGTTGCAAACATGAGCAA...
Protein
Download Protein FASTA503 aa · LXL04_032287|LXL04_032287|OH1004|PROTEIN
MPLLDSFTAISLLLLVRVLCIQASVHNYAGEKFSRKGNAFVVHGGSEGIYYSHPNLNESSASSNGDAYIRFEKITFQRTQEVANMSKGSIYAILFEVDDRETIGGSAYGGQRAICCTSDLAKLGACKEGEVIHRLSTTNPGWPQVFNVPFDSSDKTFTMEPRSVQITRTGMYNLYFMHCEPQLNDMVIEGKTIWKNPTGYLPGRMSPLLNFYGFMSLAFLVLGIFWFSQYARFWKEVLQLQNCITLVITLGMFEMALWYF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032287 |
|---|---|
| TK1151 ID | TkA08G163670 |
| OH-1004 ID | LXL04_032287 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032287 |
|---|---|
| Location | Chr07:19951334-19954114 (-) |
| Description | Similar to tmem87a: Transmembrane protein 87A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0042147 retrograde transport, endosome to Golgi Biological Process GO:0051452 intracellular pH reduction Biological Process GO:0071260 cellular response to mechanical stimulus Biological Process GO:0000139 Golgi membrane Cellular Component GO:0001726 ruffle Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0032580 Golgi cisterna membrane Cellular Component GO:0008308 voltage-gated monoatomic anion channel activity Molecular Function |
| KEGG gene cross-reference | hsa:25963 hsa:84910 mmu:211499 mmu:72477 xtr:548811 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06814.20GOST_TM207-452 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032287 | PF06814.20 | GOST_TM | 207 | 452 | 5.4e-92 | 308.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.