LXL04_032272 | RubberDandelionOmics

Gene overview

LXL04_032272

Reference: OH-1004 Chr: Chr07 Coordinates: 19773481-19785150 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3870 bp · LXL04_032272|LXL04_032272|OH1004|cDNA

ATGGAGCCTGAACCTAGAGAGAAATCGATAAATGAGGGGGCCTGTCGGAAGAAGGACGCAGCTGTGGGTGCTCTCGTTCATCTGCTCGCGCCTGGTGGTGCTACCTGCCGCCACCGTCAGCCGCCGGTCACCGCCACCAAGGTGGCAGTAGATGGTGATGGAGATGAAGTGCTCTTTTTTAATGTTTCGAATCCTtatttccggccaccaccaccgccaccagccaccatggccacggtggcagtgggtggtgatGCGTG...

CDS

Download CDS FASTA

3870 bp · LXL04_032272|LXL04_032272|OH1004|CDS

ATGGAGCCTGAACCTAGAGAGAAATCGATAAATGAGGGGGCCTGTCGGAAGAAGGACGCAGCTGTGGGTGCTCTCGTTCATCTGCTCGCGCCTGGTGGTGCTACCTGCCGCCACCGTCAGCCGCCGGTCACCGCCACCAAGGTGGCAGTAGATGGTGATGGAGATGAAGTGCTCTTTTTTAATGTTTCGAATCCTTATTTCCGGCCACCACCACCGCCACCAGCCACCATGGCCACGGTGGCAGTGGGTGGTGATGCGTG...

Protein

Download Protein FASTA

1289 aa · LXL04_032272|LXL04_032272|OH1004|PROTEIN

MEPEPREKSINEGACRKKDAAVGALVHLLAPGGATCRHRQPPVTATKVAVDGDGDEVLFFNVSNPYFRPPPPPPATMATVAVGGDAWVDSRGTSRVAGTETQTAASTLSFGLTFSHRTPPPALLGYSDADWARCLETRRSTYGYSIFLGGNLVSWSAKKQPTISHSSCESEYRVMANTAAELIWVTHLLQELHALPLFVRLFSATTKVRSFSPKTRSLTSVLSILNWIITLFANSSLPGNCIPNTGEKGKRANPHGTAVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032272`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032272

Location Chr07:19773481-19785150 (+)

Description Similar to GLIP: GDSL lipase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53920`	GDSL esterase/lipase 5.	No verified direct reference in this release
`At5g40990`	Confers resistance to the necrotrophic fungus Alternaria brassicicola.	Secretome analysis reveals an Arabidopsis lipase involved in defense against Alternaria brassicicola.2005 · DOI: 10.1105/tpc.105.034819
`At1g53940`	Involved in the resistance to the necrotropic bacteria Erwinia carotovora, probably via negative regulation of auxin signaling.	Arabidopsis GDSL lipase 2 plays a role in pathogen defense via negative regulation of auxin signaling.2009 · DOI: 10.1016/j.bbrc.2009.01.006
`At3g14225`	GDSL esterase/lipase 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032272 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009866 induced systemic resistance, ethylene mediated signaling pathway Biological Process

GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

KEGG gene cross-reference

ath:AT1G53920

ath:AT5G40990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.251

Rank 1 · LXL04_032272 · OH-1004

Extracellular0.201

Rank 2 · LXL04_032272 · OH-1004

Endoplasmic reticulum0.201

Rank 3 · LXL04_032272 · OH-1004

Cytoplasm0.149

Rank 4 · LXL04_032272 · OH-1004

Lysosome / Vacuole0.134

Rank 5 · LXL04_032272 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL328-644 aa

PF00657.29Lipase_GDSL947-1256 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032272	`PF00657.29`	Lipase_GDSL	328	644	8.7e-59	199.9
LXL04_032272	`PF00657.29`	Lipase_GDSL	947	1256	8.7e-59	199.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSA7`	Arabidopsis thaliana	GDSL esterase/lipase 5	53.083%	Swiss-Prot	weak database homology
`Q9FLN0`	Arabidopsis thaliana	GDSL esterase/lipase 1	48.098%	Swiss-Prot	weak database homology
`Q9SYF0`	Arabidopsis thaliana	GDSL esterase/lipase 2	50.000%	Swiss-Prot	weak database homology
`Q9LJP1`	Arabidopsis thaliana	GDSL esterase/lipase 4	48.415%	Swiss-Prot	weak database homology

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