LXL04_032271 | RubberDandelionOmics

Gene overview

LXL04_032271

Reference: OH-1004 Chr: Chr07 Coordinates: 19744777-19752865 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2100 bp · LXL04_032271|LXL04_032271|OH1004|cDNA

ATGATCATCGATCTCTTCCAAGCAGAAAATCCAGTGCCAGAGAACACATTAGAAACAAGAACTGTGCCTGGATTATCAGATGATCCAAGTTGCCTAACCGGTCCTCTTCCCCTTCCGATCATCTTCCTCATGGCTGCTTCATCTTCTGACTCAACTCTCTCCATGAACACTGTCCTCAATCTCATCTCAAATCGCCTCACCTCCGCCAATTACCTACTGTGGAAGAATCAACTTCTTCCCCTTCATACTTATCAGAATTT...

CDS

Download CDS FASTA

2100 bp · LXL04_032271|LXL04_032271|OH1004|CDS

ATGATCATCGATCTCTTCCAAGCAGAAAATCCAGTGCCAGAGAACACATTAGAAACAAGAACTGTGCCTGGATTATCAGATGATCCAAGTTGCCTAACCGGTCCTCTTCCCCTTCCGATCATCTTCCTCATGGCTGCTTCATCTTCTGACTCAACTCTCTCCATGAACACTGTCCTCAATCTCATCTCAAATCGCCTCACCTCCGCCAATTACCTACTGTGGAAGAATCAACTTCTTCCCCTTCATACTTATCAGAATTT...

Protein

Download Protein FASTA

699 aa · LXL04_032271|LXL04_032271|OH1004|PROTEIN

MIIDLFQAENPVPENTLETRTVPGLSDDPSCLTGPLPLPIIFLMAASSSDSTLSMNTVLNLISNRLTSANYLLWKNQLLPLHTYQNLLPLVDGTSPAPPSEQVVAGKPAPNSDFAAWQSANQRAVILLQASLSEEAFSEVVGLSTAREIWLALEAAYSSSSVERIQNLRDKLRQISKGSSSVAEFGRKFRSLFDQLAAIGQPVVDSDKVHWFFCGLGAPFETFSTAIRASRSSIGFRDLLAQAKGHELFLQSIHGSVTPT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032271`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032271

Location Chr07:19744777-19752865 (+)

Description Similar to AtMg00820: Uncharacterized mitochondrial protein AtMg00820

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P92520`	Uncharacterized mitochondrial protein AtMg00820.	No verified direct reference in this release
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032271 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · LXL04_032271 · OH-1004

Nucleus0.536

Rank 2 · LXL04_032271 · OH-1004

Mitochondrion0.073

Rank 3 · LXL04_032271 · OH-1004

Endoplasmic reticulum0.043

Rank 4 · LXL04_032271 · OH-1004

Plastid0.039

Rank 5 · LXL04_032271 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223.15Retrotran_gag_285-243 aa

PF25597.2SH3_retrovirus302-345 aa

PF07727.20RVT_2536-600 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032271	`PF14223.15`	Retrotran_gag_2	85	243	4.4e-16	59.8
LXL04_032271	`PF25597.2`	SH3_retrovirus	302	345	2.7e-13	50.2
LXL04_032271	`PF07727.20`	RVT_2	536	600	5.8e-13	49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P92520`	Arabidopsis thaliana	Uncharacterized mitochondrial protein AtMg00820	48.031%	Swiss-Prot	weak database homology
`Q94HW2`	Arabidopsis thaliana	Retrovirus-related Pol polyprotein from transposon RE1	42.953%	Swiss-Prot	weak database homology
`Q9ZT94`	Arabidopsis thaliana	Retrovirus-related Pol polyprotein from transposon RE2	43.077%	Swiss-Prot	weak database homology

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