LXL04_032239 | RubberDandelionOmics

Gene overview

LXL04_032239

Reference: OH-1004 Chr: Chr07 Coordinates: 19114040-19115497 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_032239|LXL04_032239|OH1004|cDNA

TAAAAACAACAATGGTTTGGATAAAACTGGAAGTGGTGATTTTAAGATTTTGGAGCCACCGTATACATATTGGTCTGATACGAATGGTGTGAAATAATGGGTTACGCCGCACTTGGACTGCCGTTGGCCGCTGCTCATCTCGACGTCGACGACCCCTGCAATCAAAAACCACAACTACAAACCCCTCCTGCTTACAAATGGCGCTTGGTTTTATCTTACGACGGCAATCGATTTTCCGGTTGGCAGTATCAATCATCAAC...

CDS

Download CDS FASTA

945 bp · LXL04_032239|LXL04_032239|OH1004|CDS

ATGGGTTACGCCGCACTTGGACTGCCGTTGGCCGCTGCTCATCTCGACGTCGACGACCCCTGCAATCAAAAACCACAACTACAAACCCCTCCTGCTTACAAATGGCGCTTGGTTTTATCTTACGACGGCAATCGATTTTCCGGTTGGCAGTATCAATCATCAACTCCAACCTTACAGTGCCTATTGGAACAAGCCCTAACTCGAGCTACAAAGCTAGAACGTAACGAACTGTGTGTAGTCGGTGCAAGTAGGACCGATGC...

Protein

Download Protein FASTA

314 aa · LXL04_032239|LXL04_032239|OH1004|PROTEIN

MGYAALGLPLAAAHLDVDDPCNQKPQLQTPPAYKWRLVLSYDGNRFSGWQYQSSTPTLQCLLEQALTRATKLERNELCVVGASRTDAGVHALGQVAHFVTPFNYEGLHDIHAALNGLLPPDVRVREISPAIPEFHARFSVTGKIYHYKIYNDTVMDPFHRLYAYHNLSKLNISAMKEASKYFVGKHDFSSFANKQRNDRIVNPVKNIFRVDIIEKGPILQVEVEGSGFLYRQVRNMVALLIQIGREALPPDIVPKILETC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032239`
TK1151 ID	TkA08G160770
OH-1004 ID	LXL04_032239
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.800
Protein coverage (%)	TK1151 64.516 / OH-1004 38.217 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_032239`
Location	Chr07:19114040-19115497 (+)
Description	Similar to truA1: tRNA pseudouridine synthase A 1 (Protochlamydia amoebophila (strain UWE25)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032239` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0031119 tRNA pseudouridine synthesis Biological Process GO:0003723 RNA binding Molecular Function GO:0160147 tRNA pseudouridine(38-40) synthase activity Molecular Function
KEGG gene cross-reference	cpe:CPE0991 dau:Daud_0255 drm:Dred_0255 pcu:PC_RS01600 tle:Tlet_0694 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.891

Rank 1 · LXL04_032239 · OH-1004

Cytoplasm0.086

Rank 2 · LXL04_032239 · OH-1004

Nucleus0.077

Rank 3 · LXL04_032239 · OH-1004

Plastid0.034

Rank 4 · LXL04_032239 · OH-1004

Cell membrane0.018

Rank 5 · LXL04_032239 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01416.26PseudoU_synth_140-138 aa

PF01416.26PseudoU_synth_1178-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032239	`PF01416.26`	PseudoU_synth_1	40	138	6e-38	130.4
LXL04_032239	`PF01416.26`	PseudoU_synth_1	178	284	6e-38	130.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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