LXL04_032216 | RubberDandelionOmics

Gene overview

LXL04_032216

Reference: OH-1004 Chr: Chr07 Coordinates: 18731466-18733494 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

978 bp · LXL04_032216|LXL04_032216|OH1004|cDNA

ATGTTGACGTGTATTGCTTGTACCAAGCAGCTGCACGATGGATCTCTAAACGAACAGGAAGAAGGAGACACCGCTGGCACACCAAGAACCAAGCACGCCGTTAAAACCCTCACATCTCAGATCAAGGATATTGCATTAAAGGCCTCGGGAGCATACAAAAACTGCTCGGGAACCTCTAACAACACGCCCCGTCGAGGTTATGCGGACGCTGAAGCTGGATCATCATCCGGTAGGTTTATTCGCGGGTACCAAAGGACCGG...

CDS

Download CDS FASTA

978 bp · LXL04_032216|LXL04_032216|OH1004|CDS

ATGTTGACGTGTATTGCTTGTACCAAGCAGCTGCACGATGGATCTCTAAACGAACAGGAAGAAGGAGACACCGCTGGCACACCAAGAACCAAGCACGCCGTTAAAACCCTCACATCTCAGATCAAGGATATTGCATTAAAGGCCTCGGGAGCATACAAAAACTGCTCGGGAACCTCTAACAACACGCCCCGTCGAGGTTATGCGGACGCTGAAGCTGGATCATCATCCGGTAGGTTTATTCGCGGGTACCAAAGGACCGG...

Protein

Download Protein FASTA

325 aa · LXL04_032216|LXL04_032216|OH1004|PROTEIN

MLTCIACTKQLHDGSLNEQEEGDTAGTPRTKHAVKTLTSQIKDIALKASGAYKNCSGTSNNTPRRGYADAEAGSSSGRFIRGYQRTGTATGNSTPKVWGKEMEARLKGLSSGASTPASVSGRTESVAFTEDDELKEWVAQVEPGVLITFLSLPHGGNDLKRIRFSREMFNKWQAQRWWSENCEKIMELYNVHHFNQQGVPLPSPPRSEAESSRTGSIENSPVTPPLCKERPPRNLFQSLKTERSSIDGSSKTSVDQSEEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032216`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032216

Location Chr07:18731466-18733494 (+)

Description Similar to BRXL3: Protein Brevis radix-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54180`	Protein Brevis radix-like 3.	No verified direct reference in this release
`At3g14000`	Protein Brevis radix-like 2.	No verified direct reference in this release
`At5g20540`	Protein Brevis radix-like 4.	No verified direct reference in this release
`At1g31880`	Acts as a regulator of cell proliferation and elongation in the root and shoot.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0462700`	Protein Brevis radix-like 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032216 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0010315 auxin export across the plasma membrane Biological Process

GO:0010440 stomatal lineage progression Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048364 root development Biological Process

GO:0048527 lateral root development Biological Process

GO:0048756 sieve cell differentiation Biological Process

GO:2000280 regulation of root development Biological Process

KEGG gene cross-reference

ath:AT1G31880

ath:AT1G54180

ath:AT3G14000

ath:AT5G20540

dosa:Os08g0462700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.344

Rank 1 · LXL04_032216 · OH-1004

Cytoplasm0.335

Rank 2 · LXL04_032216 · OH-1004

Nucleus0.306

Rank 3 · LXL04_032216 · OH-1004

Plastid0.114

Rank 4 · LXL04_032216 · OH-1004

Mitochondrion0.062

Rank 5 · LXL04_032216 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13713.12BRX_N25-56 aa

PF08381.17BRX135-189 aa

PF08381.17BRX269-324 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032216	`PF13713.12`	BRX_N	25	56	3.4e-13	49.7
LXL04_032216	`PF08381.17`	BRX	135	189	1.3e-52	175.7
LXL04_032216	`PF08381.17`	BRX	269	324	1.3e-52	175.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q5HZ09`	Arabidopsis thaliana	Protein Brevis radix-like 3	62.198%	Swiss-Prot	strong database homology
`Q8GYL9`	Arabidopsis thaliana	Protein Brevis radix-like 2	58.621%	Swiss-Prot	strong database homology
`Q8GZ92`	Arabidopsis thaliana	Protein Brevis radix-like 4	49.745%	Swiss-Prot	moderate database homology
`Q17TI5`	Arabidopsis thaliana	Protein BREVIS RADIX	47.592%	Swiss-Prot	moderate database homology
`Q6YUB8`	Oryza sativa subsp. japonica	Protein Brevis radix-like 1	47.942%	Swiss-Prot	moderate database homology

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