Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1554 bp · LXL04_032176|LXL04_032176|OH1004|cDNA
AAGATTCTAACTTGCTTCATCGTTTATCTTCGCCCTTTCCTCCAAGCAAAACAAAACTACACACACAACTCTTGGTTTTCTCCCATTCGATCGATCCAACACTTGGAAACCCCTGTAACTATGCCGACAGtCAGTGTAAAATGGCAAAAAGAGCTATATCGGGGCGTGGAGATAGATACGACTCAGCCTCCATGCGTTTTCAAATGTCAATTATATGACCTCACTGGAGTACCACCTGAAAGGCAAAAGATAGTGACGAA...
1452 bp · LXL04_032176|LXL04_032176|OH1004|CDS
TTGGAAACCCCTGTAACTATGCCGACAGTCAGTGTAAAATGGCAAAAAGAGCTATATCGGGGCGTGGAGATAGATACGACTCAGCCTCCATGCGTTTTCAAATGTCAATTATATGACCTCACTGGAGTACCACCTGAAAGGCAAAAGATAGTGACGAAAGGTGGATTGTTAAAGGATGACTCTGATTGGTCAAAAATGGGGGTGAAAGAGGGACAAAGGTTAATGATGATGGGAACAGCAGATGAGATTGTGAATGCCCC...
Protein
Download Protein FASTA483 aa · LXL04_032176|LXL04_032176|OH1004|PROTEIN
METPVTMPTVSVKWQKELYRGVEIDTTQPPCVFKCQLYDLTGVPPERQKIVTKGGLLKDDSDWSKMGVKEGQRLMMMGTADEIVNAPEKSPVFMEDLPEEEQVVAVGHSAGLCNLGNTCYMNSTVQCLHSVPELKAALIEYSQSGRSNDLDQSSHLLTVATRDLFTELDKNVKPVAPMQFWMVLRKKYPQFGQLHNGSFMQQDAEECWSQILYTLSQALRRPSSSIDKHCPNGTCSENIDTVKGLFGVDLVSRVHCTESG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032176 |
|---|---|
| TK1151 ID | TkA08G158400 |
| OH-1004 ID | LXL04_032176 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 96.500 |
| Protein coverage (%) | TK1151 93.281 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032176 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:17833343-17836766 (+) | |||||||||
| Description | Similar to UBP6: Ubiquitin carboxyl-terminal hydrolase 6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0016579 protein deubiquitination Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0045087 innate immune response Biological Process GO:0050920 regulation of chemotaxis Biological Process GO:0061136 regulation of proteasomal protein catabolic process Biological Process GO:0071108 protein K48-linked deubiquitination Biological Process GO:1904293 negative regulation of ERAD pathway Biological Process GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process Biological Process GO:0000502 proteasome complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G51710 ath:AT3G21280 bta:505106 hsa:9097 mmu:59025 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00240.30ubiquitin24-79 aaPF13423.13UCH_1110-448 aaPF00443.36UCH111-476 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032176 | PF00240.30 | ubiquitin | 24 | 79 | 1.3e-06 | 28.7 |
| LXL04_032176 | PF13423.13 | UCH_1 | 110 | 448 | 1e-11 | 45.8 |
| LXL04_032176 | PF00443.36 | UCH | 111 | 476 | 3.7e-57 | 194.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.