LXL04_031918 | RubberDandelionOmics

Gene overview

LXL04_031918

Reference: OH-1004 Chr: Chr07 Coordinates: 13268539-13269302 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

354 bp · LXL04_031918|LXL04_031918|OH1004|cDNA

ATGATTCCTTTGTGGATGTTTCCAGTTGCTGTTACTTGTGGTAACACTTTTGTTCTAAAACCATCAGAAAAAGATCCAGGGGCTTCTATGATGCTTGCAGAATTGGCAATGGAAGCCGGCACTAATGACATTGTGAATGCTATTTGTGATGATGAAGACATCAAGGCTATATCATTTGTCGGTTCAAACACAGCTGGCATGCATATATATTCAAGAGCATCTGCAAAAGGGAAACGTGTTCATTCTAATATGGGGCCTAA...

CDS

Download CDS FASTA

354 bp · LXL04_031918|LXL04_031918|OH1004|CDS

ATGATTCCTTTGTGGATGTTTCCAGTTGCTGTTACTTGTGGTAACACTTTTGTTCTAAAACCATCAGAAAAAGATCCAGGGGCTTCTATGATGCTTGCAGAATTGGCAATGGAAGCCGGCACTAATGACATTGTGAATGCTATTTGTGATGATGAAGACATCAAGGCTATATCATTTGTCGGTTCAAACACAGCTGGCATGCATATATATTCAAGAGCATCTGCAAAAGGGAAACGTGTTCATTCTAATATGGGGCCTAA...

Protein

Download Protein FASTA

117 aa · LXL04_031918|LXL04_031918|OH1004|PROTEIN

MIPLWMFPVAVTCGNTFVLKPSEKDPGASMMLAELAMEAGTNDIVNAICDDEDIKAISFVGSNTAGMHIYSRASAKGKRVHSNMGPKNHGIVMPDANIDATLNALVAAGFGAAEFFY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031918`
TK1151 ID	TkA08G136750
OH-1004 ID	LXL04_031918
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.200
Protein coverage (%)	TK1151 100.000 / OH-1004 95.726 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031918

Location Chr07:13268539-13269302 (-)

Description Similar to ALDH6B2: Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14170`	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031918 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006210 thymine catabolic process Biological Process

GO:0006573 valine metabolic process Biological Process

GO:0006574 L-valine catabolic process Biological Process

GO:0009083 branched-chain amino acid catabolic process Biological Process

GO:0019484 beta-alanine catabolic process Biological Process

GO:0019859 thymine metabolic process Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G14170

cel:CELE_F13D12.4

hsa:4329

mmu:104776

rno:81708

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.924

Rank 1 · LXL04_031918 · OH-1004

Cytoplasm0.027

Rank 2 · LXL04_031918 · OH-1004

Mitochondrion0.021

Rank 3 · LXL04_031918 · OH-1004

Plastid0.014

Rank 4 · LXL04_031918 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_031918 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00171.28Aldedh1-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031918	`PF00171.28`	Aldedh	1	112	2e-26	93.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WM29`	Arabidopsis thaliana	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	78.947%	Swiss-Prot	strong database homology

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