Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1324 bp · LXL04_031805|LXL04_031805|OH1004|cDNA
ATGCCACAGGCCGAACGGCGAGAACGCATTTTCGACGGCGCAGTGCAAGAGAGTAAACCGGAGAACGAGAAGATGAAGTTTGCGGTGAAGGCATGGAGCAAAAGCGGGCGGGCAAGGGTGGGCCTCTTGCAATTAAGCAGTAGTTTTGCTCAAGGAGGACCACCGGCAAAAGAGATTGAGATAGAGACACCAGCTCTTCTTCTCACAACTCGCAAAGGCTTACCTGCTTTCATATCCCCTGACCATCTTTCATCCCTTCC...
1305 bp · LXL04_031805|LXL04_031805|OH1004|CDS
ATGCCACAGGCCGAACGGCGAGAACGCATTTTCGACGGCGCAGTGCAAGAGAGTAAACCGGAGAACGAGAAGATGAAGTTTGCGGTGAAGGCATGGAGCAAAAGCGGGCGGGCAAGGGTGGGCCTCTTGCAATTAAGCAGTAGTTTTGCTCAAGGAGGACCACCGGCAAAAGAGATTGAGATAGAGACACCAGCTCTTCTTCTCACAACTCGCAAAGGCTTACCTGCTTTCATATCCCCTGACCATCTTTCATCCCTTCC...
Protein
Download Protein FASTA434 aa · LXL04_031805|LXL04_031805|OH1004|PROTEIN
MPQAERRERIFDGAVQESKPENEKMKFAVKAWSKSGRARVGLLQLSSSFAQGGPPAKEIEIETPALLLTTRKGLPAFISPDHLSSLPSPDSRLLQFSPMHFMEGPNSNTISTIGGVHQLLGLPDYGFIALPRDSILSLPECSSSNKHGASFETPCGRFLVKPLEYMKMISSMKPDLWVSLADEVHASVTVKRNKASVDRTIRWLDDCISLKSTDGALFGSIVGGSSIEERQHCAQEVAKRNVSGFYLGGFGLGDNVDERS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031805 |
|---|---|
| TK1151 ID | TkA08G130750 |
| OH-1004 ID | LXL04_031805 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 97.955 / OH-1004 99.309Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031805 |
|---|---|
| Location | Chr07:11490100-11492361 (-) |
| Description | Similar to QTRT2: Queuine tRNA-ribosyltransferase accessory subunit 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002099 tRNA wobble guanine modification Biological Process GO:0006400 tRNA modification Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005741 mitochondrial outer membrane Cellular Component GO:0032473 cytoplasmic side of mitochondrial outer membrane Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0120507 tRNA-guanine transglycosylase complex Cellular Component GO:1990234 transferase complex Cellular Component GO:0000049 tRNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity Molecular Function |
| KEGG gene cross-reference | gga:418351 hsa:79691 mmu:106248 pon:100190841 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01702.26TGT38-420 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031805 | PF01702.26 | TGT | 38 | 420 | 5e-86 | 289.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.