LXL04_031767 | RubberDandelionOmics

Gene overview

LXL04_031767

Reference: OH-1004 Chr: Chr07 Coordinates: 11078038-11082650 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2667 bp · LXL04_031767|LXL04_031767|OH1004|cDNA

ATGGATTCAAAATCCTACGACGAGCTGCATGGAATTAACAACTGGGACGGTCTTCTTGACCCCTTACACCTCGATCTCCGCACTCTAATTCTCCACTATGGTGACCTTTCTTCGGCTACAGAACAAGCATTCGATCGGAACTCCGGCTACAGCCACTACGGGAAGAGCTCCTTTTTCAAAGGAGTCATGCTCCCATGGGCTGATTCCAATTACGAAGTAACTTCCTTCCTCTACGCCACCTCTCGTATCGAATCCAAGCT...

CDS

Download CDS FASTA

2667 bp · LXL04_031767|LXL04_031767|OH1004|CDS

ATGGATTCAAAATCCTACGACGAGCTGCATGGAATTAACAACTGGGACGGTCTTCTTGACCCCTTACACCTCGATCTCCGCACTCTAATTCTCCACTATGGTGACCTTTCTTCGGCTACAGAACAAGCATTCGATCGGAACTCCGGCTACAGCCACTACGGGAAGAGCTCCTTTTTCAAAGGAGTCATGCTCCCATGGGCTGATTCCAATTACGAAGTAACTTCCTTCCTCTACGCCACCTCTCGTATCGAATCCAAGCT...

Protein

Download Protein FASTA

888 aa · LXL04_031767|LXL04_031767|OH1004|PROTEIN

MDSKSYDELHGINNWDGLLDPLHLDLRTLILHYGDLSSATEQAFDRNSGYSHYGKSSFFKGVMLPWADSNYEVTSFLYATSRIESKLALLFHPMSRENSEFESNWMGYIAVSNDQFSKTIGRREICVVWRGSLQNYEYLDDFLGAKMVPMDPILPRDESKNAPKVMEGWLTVYNTSDPDSEFVKLSARTQLLTQIKELLDKFKDEKVSITLTGHSLGASLAVLSAFDLATNVATRDIHLSAFILECPQVGNQAFKEKMQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031767`
TK1151 ID	TkA08G129110
OH-1004 ID	LXL04_031767
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.200
Protein coverage (%)	TK1151 99.119 / OH-1004 27.928 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031767

Location Chr07:11078038-11082650 (+)

Description Similar to At2g42690: Phospholipase A1-IIdelta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42690`	Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine (PC) at the sn-1 position.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0651100`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`UniProt: A2WT95`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`UniProt: B8A8C9`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`Os01g0710700`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031767 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009650 UV protection Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0071493 cellular response to UV-B Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008970 glycerophospholipid phospholipase A1 activity Molecular Function

KEGG gene cross-reference

ath:AT2G42690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.630

Rank 1 · LXL04_031767 · OH-1004

Nucleus0.174

Rank 2 · LXL04_031767 · OH-1004

Lysosome / Vacuole0.102

Rank 3 · LXL04_031767 · OH-1004

Cell membrane0.099

Rank 4 · LXL04_031767 · OH-1004

Endoplasmic reticulum0.087

Rank 5 · LXL04_031767 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01764.32Lipase_3127-281 aa

PF01764.32Lipase_3596-754 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031767	`PF01764.32`	Lipase_3	127	281	5.1e-54	182.7
LXL04_031767	`PF01764.32`	Lipase_3	596	754	5.1e-54	182.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJI7`	Arabidopsis thaliana	Phospholipase A1-IIdelta	47.073%	Swiss-Prot	weak database homology
`A2ZW16`	Oryza sativa subsp. japonica	Phospholipase A1-II 1	40.528%	Swiss-Prot	weak database homology
`A2WT95`	Oryza sativa subsp. indica	Phospholipase A1-II 1	40.528%	Swiss-Prot	weak database homology
`B8A8C9`	Oryza sativa subsp. indica	Phospholipase A1-II 5	37.946%	Swiss-Prot	weak database homology
`Q5NAI4`	Oryza sativa subsp. japonica	Phospholipase A1-II 5	40.941%	Swiss-Prot	weak database homology

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