LXL04_031667 | RubberDandelionOmics

Gene overview

LXL04_031667

Reference: OH-1004 Chr: Chr07 Coordinates: 9362793-9366098 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2394 bp · LXL04_031667|LXL04_031667|OH1004|cDNA

ATGGCAGACCACAATCACCACATAAGCATATTCCTCCTCCTCACTTTATGTTGCTCTGTTTTCTGCAACTCTTGCTACTCAGAAACAGATACCTTACGACAAGGTCAACATCTCACCGACTGGGATGAGCTGATTTCACCAAACAAGGTCTTCGCTTTGAAATTCTTTAGCTTCGGCAGTAGTATCAAACCCTATTTAGGGATTTTCTACGCTCACCTAGAAACGTCTGGCCAAAATAGGGCAGTTTGGGTTGCAAACAG...

CDS

Download CDS FASTA

2394 bp · LXL04_031667|LXL04_031667|OH1004|CDS

ATGGCAGACCACAATCACCACATAAGCATATTCCTCCTCCTCACTTTATGTTGCTCTGTTTTCTGCAACTCTTGCTACTCAGAAACAGATACCTTACGACAAGGTCAACATCTCACCGACTGGGATGAGCTGATTTCACCAAACAAGGTCTTCGCTTTGAAATTCTTTAGCTTCGGCAGTAGTATCAAACCCTATTTAGGGATTTTCTACGCTCACCTAGAAACGTCTGGCCAAAATAGGGCAGTTTGGGTTGCAAACAG...

Protein

Download Protein FASTA

797 aa · LXL04_031667|LXL04_031667|OH1004|PROTEIN

MADHNHHISIFLLLTLCCSVFCNSCYSETDTLRQGQHLTDWDELISPNKVFALKFFSFGSSIKPYLGIFYAHLETSGQNRAVWVANRNNPIKDIYGKLAIDDHGKLSILSVIDLFSPPTPCNASATLLDTGNFVLQELNPDGSVKQVLWQSFDYPTDTLLPGMKLGIDLKTGHRWSLTSWRSETQPADGSFTLTGDPNGTDQMAILRRGKVHWMSGSWQNGGFENTVLRYSPDVHLYYVSNETEQSFTYLTKTYDSPPGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031667`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031667

Location Chr07:9362793-9366098 (+)

Description Similar to At1g67520: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67520`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520.	No verified direct reference in this release
`At3g16030`	Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli.	Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli.2006 · DOI: 10.1093/pcp/pci242
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g61610`	Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610.	No verified direct reference in this release
`At1g65800`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031667 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009620 response to fungus Biological Process

GO:0045087 innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G61610

ath:AT1G65800

ath:AT1G67520

ath:AT3G16030

ath:AT4G21380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.856

Rank 1 · LXL04_031667 · OH-1004

Endoplasmic reticulum0.086

Rank 2 · LXL04_031667 · OH-1004

Cytoplasm0.075

Rank 3 · LXL04_031667 · OH-1004

Nucleus0.040

Rank 4 · LXL04_031667 · OH-1004

Lysosome / Vacuole0.030

Rank 5 · LXL04_031667 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin82-181 aa

PF00069.32Pkinase481-681 aa

PF07714.24PK_Tyr_Ser-Thr483-693 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031667	`PF01453.31`	B_lectin	82	181	1.7e-27	96.6
LXL04_031667	`PF00069.32`	Pkinase	481	681	4.7e-46	158.0
LXL04_031667	`PF07714.24`	PK_Tyr_Ser-Thr	483	693	3e-46	158.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64793`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520	43.648%	Swiss-Prot	moderate database homology
`Q9LW83`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	42.686%	Swiss-Prot	moderate database homology
`O81905`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-8	38.267%	Swiss-Prot	moderate database homology
`Q9SY89`	Arabidopsis thaliana	Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610	36.249%	Swiss-Prot	moderate database homology
`Q9S972`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-6	37.838%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card