LXL04_031660 | RubberDandelionOmics

Gene overview

LXL04_031660

Reference: OH-1004 Chr: Chr07 Coordinates: 9292498-9294584 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

920 bp · LXL04_031660|LXL04_031660|OH1004|cDNA

ATGACTTTATCTTGCTTTTCTCTCTCGACAACTGTATTTCCTCCCCTGCAACTTCCTCACCGCCGGCCAATTCATTTTCAGTCGTTCAACGTTaaagcttcttcttcttcttcttcttcgccGACGAATTCTTCCTCGAATCATCGAGTTGTTGTTACGCGGGAGCGTGGTAAAAATGGCAAGCTCATGAAAGCTCTTGCACCACTTGGAATCAGTTGTTTGGAGCTTCCTCTAATTCAACATAAACACCTACCTGACCT...

CDS

Download CDS FASTA

903 bp · LXL04_031660|LXL04_031660|OH1004|CDS

ATGACTTTATCTTGCTTTTCTCTCTCGACAACTGTATTTCCTCCCCTGCAACTTCCTCACCGCCGGCCAATTCATTTTCAGTCGTTCAACGTTAAAGCTTCTTCTTCTTCTTCTTCTTCGCCGACGAATTCTTCCTCGAATCATCGAGTTGTTGTTACGCGGGAGCGTGGTAAAAATGGCAAGCTCATGAAAGCTCTTGCACCACTTGGAATCAGTTGTTTGGAGCTTCCTCTAATTCAACATAAACACCTACCTGACCT...

Protein

Download Protein FASTA

300 aa · LXL04_031660|LXL04_031660|OH1004|PROTEIN

MTLSCFSLSTTVFPPLQLPHRRPIHFQSFNVKASSSSSSSPTNSSSNHRVVVTRERGKNGKLMKALAPLGISCLELPLIQHKHLPDLDKVSALLNANTFNWIIITSPEAALVFLDAWKAAGSPNVKIAVVGSGTSSIFDEATSSTNQLIDVAFVPSKATGKVLASELPKHGNENCNVLYPASEKASHDIENGLSNRGFHVTRLNTYTTESVEYVDQMILEQALSSSVVAVASPSAIRAWMNLVSESDRWHGSVACIGETT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031660`
TK1151 ID	TkA08G121040
OH-1004 ID	LXL04_031660
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031660

Location Chr07:9292498-9294584 (-)

Description Similar to UROS: Uroporphyrinogen-III synthase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26540`	Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, a precursor of tetrapyrroles such as chlorophyll, heme and phycobilins.	Identification and characterization of the Arabidopsis gene encoding the tetrapyrrole biosynthesis enzyme uroporphyrinogen III synthase.2008 · DOI: 10.1042/bj20070770

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0186100`	Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, a precursor of tetrapyrroles such as chlorophyll, heme and phycobilins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031660 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006780 uroporphyrinogen III biosynthetic process Biological Process

GO:0006782 protoporphyrinogen IX biosynthetic process Biological Process

GO:0015995 chlorophyll biosynthetic process Biological Process

GO:0019354 siroheme biosynthetic process Biological Process

GO:0032259 methylation Biological Process

GO:0005777 peroxisome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004851 uroporphyrin-III C-methyltransferase activity Molecular Function

GO:0004852 uroporphyrinogen-III synthase activity Molecular Function

KEGG gene cross-reference

ath:AT2G26540

dosa:Os03g0186100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.968

Rank 1 · LXL04_031660 · OH-1004

Mitochondrion0.050

Rank 2 · LXL04_031660 · OH-1004

Cytoplasm0.029

Rank 3 · LXL04_031660 · OH-1004

Nucleus0.026

Rank 4 · LXL04_031660 · OH-1004

Peroxisome0.016

Rank 5 · LXL04_031660 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02602.21HEM463-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031660	`PF02602.21`	HEM4	63	284	2.1e-44	152.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O48721`	Arabidopsis thaliana	Uroporphyrinogen-III synthase, chloroplastic	62.602%	Swiss-Prot	strong database homology
`Q10QR9`	Oryza sativa subsp. japonica	Uroporphyrinogen-III synthase, chloroplastic	62.400%	Swiss-Prot	strong database homology

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