LXL04_031635 | RubberDandelionOmics

Gene overview

LXL04_031635

Reference: OH-1004 Chr: Chr07 Coordinates: 8767652-8769223 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

849 bp · LXL04_031635|LXL04_031635|OH1004|cDNA

ATGGACGCGATCGTTTGTCGTCTCCGGCGTGTAGTGCGGCCGTTAATATCATCACCGTCTTTTCGACCTCTTCAAGCACGGAGAGTACTCTCCTCATCCTCCGAATACGAGAGCTTCCCGACCCGACAGTTAGTAACCGGAGATTCGGAAGAACGGAGGACAGGAAGTGACGTCTATCGGCACACTCTCAAAACGCAACGTCCTTCCACAGTTCGGTGGCAAAAGGTGCTGGAAAATCACGCCAGCTTCATCGGCAGAGT...

CDS

Download CDS FASTA

849 bp · LXL04_031635|LXL04_031635|OH1004|CDS

ATGGACGCGATCGTTTGTCGTCTCCGGCGTGTAGTGCGGCCGTTAATATCATCACCGTCTTTTCGACCTCTTCAAGCACGGAGAGTACTCTCCTCATCCTCCGAATACGAGAGCTTCCCGACCCGACAGTTAGTAACCGGAGATTCGGAAGAACGGAGGACAGGAAGTGACGTCTATCGGCACACTCTCAAAACGCAACGTCCTTCCACAGTTCGGTGGCAAAAGGTGCTGGAAAATCACGCCAGCTTCATCGGCAGAGT...

Protein

Download Protein FASTA

282 aa · LXL04_031635|LXL04_031635|OH1004|PROTEIN

MDAIVCRLRRVVRPLISSPSFRPLQARRVLSSSSEYESFPTRQLVTGDSEERRTGSDVYRHTLKTQRPSTVRWQKVLENHASFIGRVNSPLKTFTKSGGILLVHTNLKVESPSGSNRFFTIFLDMWEDMAELSIQHLKLNDYIYASGYLRSFTKACNNGNIILNQKLIVKEINYVTNNNKNPKNTQDSEESSIEKQRKRFHLWQVFFSNPHEWRDLRKSKKNPRQPDFTHRGSGEALWLSPRDPPWIMRQLQLQDSRLGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031635`
TK1151 ID	TkA08G119050
OH-1004 ID	LXL04_031635
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 56.028 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031635

Location Chr07:8767652-8769223 (-)

Description Similar to OSB1: Protein OSB1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47720`	Regulates mitochondrial DNA recombination.	The plant-specific ssDNA binding protein OSB1 is involved in the stoichiometric transmission of mitochondrial DNA in Arabidopsis.2006 · DOI: 10.1105/tpc.106.042028
`At4g20010`	Binds preferentially single-stranded DNA.	No verified direct reference in this release
`At5g44785`	Binds single-stranded DNA.	No verified direct reference in this release
`At1g31010`	Binds single-stranded DNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031635 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000001 mitochondrion inheritance Biological Process

GO:0006260 DNA replication Biological Process

GO:0045910 negative regulation of DNA recombination Biological Process

GO:0090297 positive regulation of mitochondrial DNA replication Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0042644 chloroplast nucleoid Cellular Component

GO:0042645 mitochondrial nucleoid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0003697 single-stranded DNA binding Molecular Function

GO:0008047 enzyme activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G47720

ath:AT4G20010

ath:AT5G44785

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.781

Rank 1 · LXL04_031635 · OH-1004

Plastid0.121

Rank 2 · LXL04_031635 · OH-1004

Nucleus0.083

Rank 3 · LXL04_031635 · OH-1004

Cytoplasm0.033

Rank 4 · LXL04_031635 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_031635 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30940.1OSB_SSB77-175 aa

PF30937.1OSB_PDF205-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031635	`PF30940.1`	OSB_SSB	77	175	1.8e-17	64.1
LXL04_031635	`PF30937.1`	OSB_PDF	205	253	7.5e-16	58.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SX99`	Arabidopsis thaliana	Protein OSB1, mitochondrial	38.428%	Swiss-Prot	moderate database homology
`Q8GXH3`	Arabidopsis thaliana	Protein OSB2, chloroplastic	26.829%	Swiss-Prot	weak database homology
`Q8GWJ4`	Arabidopsis thaliana	Protein OSB3, chloroplastic/mitochondrial	27.723%	Swiss-Prot	weak database homology
`Q9FYJ2`	Arabidopsis thaliana	Protein OSB4, chloroplastic	25.366%	Swiss-Prot	weak database homology

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