LXL04_031591 | RubberDandelionOmics

Gene overview

LXL04_031591

Reference: OH-1004 Chr: Chr07 Coordinates: 8033658-8035611 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1014 bp · LXL04_031591|LXL04_031591|OH1004|cDNA

ATGTGGGGCTACCAAGTTTTTGACTGCCGTGTTCTTATAAACGTTCCTTATTGGAAGCATAACCATTGTTGTTGGATTACTTTGTTTGCTTTACCAGTATATCTATATGACGTTGCACAATTTGTCACCATGTCCATCTTTCGCCGCCGTGGATCTTCTCACCAACAACAAGAACAAGAGCACCCTGAGCTGCAATCCGAGTCCAAGGTCAACGAGCTTAAAGCTGCACTTGGACCACTTTCGGGGCGTAACTTACTGTA...

CDS

Download CDS FASTA

1014 bp · LXL04_031591|LXL04_031591|OH1004|CDS

ATGTGGGGCTACCAAGTTTTTGACTGCCGTGTTCTTATAAACGTTCCTTATTGGAAGCATAACCATTGTTGTTGGATTACTTTGTTTGCTTTACCAGTATATCTATATGACGTTGCACAATTTGTCACCATGTCCATCTTTCGCCGCCGTGGATCTTCTCACCAACAACAAGAACAAGAGCACCCTGAGCTGCAATCCGAGTCCAAGGTCAACGAGCTTAAAGCTGCACTTGGACCACTTTCGGGGCGTAACTTACTGTA...

Protein

Download Protein FASTA

337 aa · LXL04_031591|LXL04_031591|OH1004|PROTEIN

MWGYQVFDCRVLINVPYWKHNHCCWITLFALPVYLYDVAQFVTMSIFRRRGSSHQQQEQEHPELQSESKVNELKAALGPLSGRNLLYCTDACLRRYLEARNWNVDKAKKMLEGTLAWRSTYKPEEIRWHEVAMEGETGKLFRANFHDRVGRTVLILKPGLQNTKSMDNQIKHLVYLMENAMLNLPEGQEEMAWLIDFTGWSFTTNVPVRTARDTINILQDHYPQRLAVAFLYTPPRIFEAFWKIVKYFMDPKTFQKVKFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031591`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_031591`
Location	Chr07:8033658-8035611 (+)
Description	Similar to SPCC23B6.04c: CRAL-TRIO domain-containing protein C23B6.04c (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031591` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006658 phosphatidylserine metabolic process Biological Process GO:0008654 phospholipid biosynthetic process Biological Process GO:0009395 phospholipid catabolic process Biological Process GO:0009410 response to xenobiotic stimulus Biological Process GO:0015914 phospholipid transport Biological Process GO:0016126 sterol biosynthetic process Biological Process GO:0043001 Golgi to plasma membrane protein transport Biological Process GO:0120010 intermembrane phospholipid transfer Biological Process GO:1901352 negative regulation of phosphatidylglycerol biosynthetic process Biological Process GO:2001247 positive regulation of phosphatidylcholine biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005768 endosome Cellular Component
KEGG gene cross-reference	ago:AGOS_AER041W ddi:DDB_G0269182 sce:YNL231C sce:YNL264C spo:2539120 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.294

Rank 1 · LXL04_031591 · OH-1004

Cytoplasm0.252

Rank 2 · LXL04_031591 · OH-1004

Mitochondrion0.162

Rank 3 · LXL04_031591 · OH-1004

Golgi apparatus0.159

Rank 4 · LXL04_031591 · OH-1004

Cell membrane0.139

Rank 5 · LXL04_031591 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03765.22CRAL_TRIO_N88-112 aa

PF00650.26CRAL_TRIO138-286 aa

PF13716.12CRAL_TRIO_2163-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031591	`PF03765.22`	CRAL_TRIO_N	88	112	3.8e-08	34.1
LXL04_031591	`PF00650.26`	CRAL_TRIO	138	286	8.7e-36	123.8
LXL04_031591	`PF13716.12`	CRAL_TRIO_2	163	295	4.7e-09	37.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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