LXL04_031555 | RubberDandelionOmics

Gene overview

LXL04_031555

Reference: OH-1004 Chr: Chr07 Coordinates: 7617007-7619953 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1203 bp · LXL04_031555|LXL04_031555|OH1004|cDNA

ATGgaatcttcaaatcttcatcacCATCAACAACAAGATCTTGTAGTCGACTCTTCTTGTTATGGACTTGCTTGGTATCAAAACCCCATCCTTAATGGTACAAGAAACAATATAGACGCAAGAGATTTGAAGCAACATTTAAATAGTAGTCTAGATCTCGTACCTTCTCCTATGGTACAAGATAATTTAGGATTACTACCTTGGAGTAGTAGTACGATGGAAAGTTTCATGGCTCATGAACTACAACATTTTGCAAGAAT...

CDS

Download CDS FASTA

1203 bp · LXL04_031555|LXL04_031555|OH1004|CDS

ATGGAATCTTCAAATCTTCATCACCATCAACAACAAGATCTTGTAGTCGACTCTTCTTGTTATGGACTTGCTTGGTATCAAAACCCCATCCTTAATGGTACAAGAAACAATATAGACGCAAGAGATTTGAAGCAACATTTAAATAGTAGTCTAGATCTCGTACCTTCTCCTATGGTACAAGATAATTTAGGATTACTACCTTGGAGTAGTAGTACGATGGAAAGTTTCATGGCTCATGAACTACAACATTTTGCAAGAAT...

Protein

Download Protein FASTA

400 aa · LXL04_031555|LXL04_031555|OH1004|PROTEIN

MESSNLHHHQQQDLVVDSSCYGLAWYQNPILNGTRNNIDARDLKQHLNSSLDLVPSPMVQDNLGLLPWSSSTMESFMAHELQHFARIKHQVSLSEIISNSPTSSIEDLQHRFNNDHNNNQEMFLKTFSNGCQIKVDHHQHMNHHHQIPFSEESVSYNSEDTSSCYKGTFSQILPTINISSLINQSSTTPSSSSSFDINLPALDHFGSPTFDGSFSYQQPSSVNVHNLGALVKDNFLSCGLDQMHQPNHSKIPPAFIVETT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031555`
TK1151 ID	TkA08G114140
OH-1004 ID	LXL04_031555
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031555

Location Chr07:7617007-7619953 (+)

Description Similar to BHLH110: Transcription factor bHLH110

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g27660`	Transcription factor bHLH110.	No verified direct reference in this release
`At4g29100`	Transcription factor bHLH68.	No verified direct reference in this release
`At2g20100`	Transcription factor bHLH133.	No verified direct reference in this release
`At4g21340`	Transcription factor bHLH103.	No verified direct reference in this release
`At2g31730`	Transcription factor bHLH154.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031555 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G27660

ath:AT2G20100

ath:AT2G31730

ath:AT4G21340

ath:AT4G29100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · LXL04_031555 · OH-1004

Cytoplasm0.075

Rank 2 · LXL04_031555 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_031555 · OH-1004

Endoplasmic reticulum0.019

Rank 4 · LXL04_031555 · OH-1004

Plastid0.012

Rank 5 · LXL04_031555 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27761.2VUP_C370-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031555	`PF27761.2`	VUP_C	370	387	8.8e-08	31.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SFZ3`	Arabidopsis thaliana	Transcription factor bHLH110	45.607%	Swiss-Prot	moderate database homology
`Q8S3D1`	Arabidopsis thaliana	Transcription factor bHLH68	45.695%	Swiss-Prot	weak database homology
`Q7XHI5`	Arabidopsis thaliana	Transcription factor bHLH133	43.333%	Swiss-Prot	weak database homology
`Q8VZ22`	Arabidopsis thaliana	Transcription factor bHLH103	48.855%	Swiss-Prot	weak database homology
`Q7XJU1`	Arabidopsis thaliana	Transcription factor bHLH154	46.715%	Swiss-Prot	weak database homology

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