LXL04_031544 | RubberDandelionOmics

Gene overview

LXL04_031544

Reference: OH-1004 Chr: Chr07 Coordinates: 7377052-7382017 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2539 bp · LXL04_031544|LXL04_031544|OH1004|cDNA

ATGGAGGCCATCTCTGTCTTCAAGCTTTTAGGTTTCTTCGTTATCTTTACACACCTGCATCTGATTACGGGTACCGTGACATATGATCGCCGATCTTTAATTATCAATGGCGAAAGAAGAATCCTCATTTCTGGTTCAATACATTACCCCAGAAGCACCCCTGAAATGTGGGAAGATCTTGTCATTAAAGCAAAGAATGGGGGGTTAGATGTAATTGACACTTATGTGTTTTGGAATGTTCATGAGCCTTCCCCTGGTAT...

CDS

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2529 bp · LXL04_031544|LXL04_031544|OH1004|CDS

ATGGAGGCCATCTCTGTCTTCAAGCTTTTAGGTTTCTTCGTTATCTTTACACACCTGCATCTGATTACGGGTACCGTGACATATGATCGCCGATCTTTAATTATCAATGGCGAAAGAAGAATCCTCATTTCTGGTTCAATACATTACCCCAGAAGCACCCCTGAAATGTGGGAAGATCTTGTCATTAAAGCAAAGAATGGGGGGTTAGATGTAATTGACACTTATGTGTTTTGGAATGTTCATGAGCCTTCCCCTGGTAT...

Protein

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842 aa · LXL04_031544|LXL04_031544|OH1004|PROTEIN

MEAISVFKLLGFFVIFTHLHLITGTVTYDRRSLIINGERRILISGSIHYPRSTPEMWEDLVIKAKNGGLDVIDTYVFWNVHEPSPGIYDFTGRYDIVRFIKTVARNGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKAAMQGFTRKIVEMMKAENLFESQGGPIILSQIENEYGAQRKSYGAAGKAYINWAAKMAAELNTGVPWSMCKEVDAPDPVINTCNGFYCDTFTPNKPYKPAIWTEAWSGWFTEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031544`
TK1151 ID	TkA08G112800
OH-1004 ID	LXL04_031544
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031544

Location Chr07:7377052-7382017 (-)

Description Similar to BGAL3: Beta-galactosidase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36360`	Beta-galactosidase 3.	No verified direct reference in this release
`At3g13750`	Beta-galactosidase 1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0165400`	Beta-galactosidase 5.	No verified direct reference in this release
`Os01g0580200`	Beta-galactosidase 2.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031544 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT3G13750

ath:AT4G36360

dosa:Os01g0580200

dosa:Os03g0165400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.461

Rank 1 · LXL04_031544 · OH-1004

Lysosome / Vacuole0.179

Rank 2 · LXL04_031544 · OH-1004

Cytoplasm0.118

Rank 3 · LXL04_031544 · OH-1004

Endoplasmic reticulum0.109

Rank 4 · LXL04_031544 · OH-1004

Cell membrane0.098

Rank 5 · LXL04_031544 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301.26Glyco_hydro_3532-337 aa

PF02449.22Glyco_hydro_4254-202 aa

PF17834.8GHD360-415 aa

PF21467.4BetaGal_gal-bd468-520 aa

PF21467.4BetaGal_gal-bd619-703 aa

PF02140.24SUEL_Lectin760-837 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031544	`PF01301.26`	Glyco_hydro_35	32	337	1e-121	407.2
LXL04_031544	`PF02449.22`	Glyco_hydro_42	54	202	6.7e-06	26.4
LXL04_031544	`PF17834.8`	GHD	360	415	1.4e-24	86.3
LXL04_031544	`PF21467.4`	BetaGal_gal-bd	468	520	7.7e-33	113.2
LXL04_031544	`PF21467.4`	BetaGal_gal-bd	619	703	7.7e-33	113.2
LXL04_031544	`PF02140.24`	SUEL_Lectin	760	837	4.7e-21	75.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCV9`	Arabidopsis thaliana	Beta-galactosidase 3	65.663%	Swiss-Prot	strong database homology
`Q9SCW1`	Arabidopsis thaliana	Beta-galactosidase 1	60.166%	Swiss-Prot	strong database homology
`Q10RB4`	Oryza sativa subsp. japonica	Beta-galactosidase 5	64.988%	Swiss-Prot	strong database homology
`Q8W0A1`	Oryza sativa subsp. japonica	Beta-galactosidase 2	60.517%	Swiss-Prot	strong database homology

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