LXL04_031529 | RubberDandelionOmics

Gene overview

LXL04_031529

Reference: OH-1004 Chr: Chr07 Coordinates: 7170924-7172560 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

907 bp · LXL04_031529|LXL04_031529|OH1004|cDNA

CAGCCCATATAACATGGCCCAATTATGTGAAACCCTAAATCTAAAACTATAAGCGTCGTCTCTTATAAACACAAAAACCCTTTTCATCACTGCCGTTTTCCAGACCTTCAATCTCAAGGTCCAGAGTCCAGACATGGCTCCAAAGAAAGGTGGAAAGGCAGTAGCAACAAAGAAGAAAACGGAAAAGGTAGCGAATCCGTTGTTTGAGAAGAGGACCAAACAGTTCGGAATAGGAGGAGCATTGCCTCCTAAGAAGGACG...

CDS

Download CDS FASTA

774 bp · LXL04_031529|LXL04_031529|OH1004|CDS

ATGGCTCCAAAGAAAGGTGGAAAGGCAGTAGCAACAAAGAAGAAAACGGAAAAGGTAGCGAATCCGTTGTTTGAGAAGAGGACCAAACAGTTCGGAATAGGAGGAGCATTGCCTCCTAAGAAGGACGTCCACAGGTTCGTAAGATGGCCGCAAGTCGTTCGCATTCAGAGGAAGAGGAGAATCCTCAAGCAGCGTTTGAAGGTCCCACCTGCTTTGAACCAGTTTACCAAAACCCTAGACAAAAATCTAGCCACTACTTT...

Protein

Download Protein FASTA

257 aa · LXL04_031529|LXL04_031529|OH1004|PROTEIN

MAPKKGGKAVATKKKTEKVANPLFEKRTKQFGIGGALPPKKDVHRFVRWPQVVRIQRKRRILKQRLKVPPALNQFTKTLDKNLATTLFKMLLKYRPEDKAAKKERLIKRAQAESEGKTAEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGTIVHQKTAAALCLTTVKNEDKMEFSRILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRLN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031529`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031529

Location Chr07:7170924-7172560 (-)

Description Similar to RPL7A-2: 60S ribosomal protein L7a-2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62870`	Large ribosomal subunit protein eL8y.	No verified direct reference in this release
`At2g47610`	Large ribosomal subunit protein eL8z.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0507800`	Large ribosomal subunit protein eL8y.	No verified direct reference in this release
`Os08g0326400`	Large ribosomal subunit protein eL8z.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031529 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000470 maturation of LSU-rRNA Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G47610

ath:AT3G62870

dosa:Os08g0326400

dosa:Os09g0507800

osa:4345279

tru:101064977

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.754

Rank 1 · LXL04_031529 · OH-1004

Nucleus0.239

Rank 2 · LXL04_031529 · OH-1004

Cell membrane0.059

Rank 3 · LXL04_031529 · OH-1004

Endoplasmic reticulum0.047

Rank 4 · LXL04_031529 · OH-1004

Mitochondrion0.036

Rank 5 · LXL04_031529 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01248.32Ribosomal_L7Ae114-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031529	`PF01248.32`	Ribosomal_L7Ae	114	204	1.4e-26	92.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZH9`	Arabidopsis thaliana	Large ribosomal subunit protein eL8y	87.160%	Swiss-Prot	strong database homology
`P49692`	Arabidopsis thaliana	Large ribosomal subunit protein eL8z	85.603%	Swiss-Prot	strong database homology
`P0DKK7`	Oryza sativa subsp. japonica	Large ribosomal subunit protein eL8y	86.822%	Swiss-Prot	strong database homology
`P35685`	Oryza sativa subsp. japonica	Large ribosomal subunit protein eL8z	86.822%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card