LXL04_031511 | RubberDandelionOmics

Gene overview

LXL04_031511

Reference: OH-1004 Chr: Chr07 Coordinates: 6966369-6967436 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

579 bp · LXL04_031511|LXL04_031511|OH1004|cDNA

ATGGAACCGATAGATATCGTTGGCAAGACGAAAGAGGATGCTTCGCTCCCAAAAGCCACGATGACCAAAATCATCAAAGAAATGTTACCTCCAGATGTACGTGTAGCAAGAGACACTCAAGATCTGTTAATCGAGTGCTGTGTTGGTGAGATATTCCATCATACTTTTTCATACAACCAAACAACCCTCTCTCCCATCCAACTCCTGTATAATCTCTCCACTCTTCTTCACTTTGCAGAATTCATAAACCTAATCTCATC...

CDS

Download CDS FASTA

579 bp · LXL04_031511|LXL04_031511|OH1004|CDS

ATGGAACCGATAGATATCGTTGGCAAGACGAAAGAGGATGCTTCGCTCCCAAAAGCCACGATGACCAAAATCATCAAAGAAATGTTACCTCCAGATGTACGTGTAGCAAGAGACACTCAAGATCTGTTAATCGAGTGCTGTGTTGGTGAGATATTCCATCATACTTTTTCATACAACCAAACAACCCTCTCTCCCATCCAACTCCTGTATAATCTCTCCACTCTTCTTCACTTTGCAGAATTCATAAACCTAATCTCATC...

Protein

Download Protein FASTA

192 aa · LXL04_031511|LXL04_031511|OH1004|PROTEIN

MEPIDIVGKTKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVGEIFHHTFSYNQTTLSPIQLLYNLSTLLHFAEFINLISSESNEVCGREDRRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKHETMDTVRGVKCTNGAEMTEEEALAEQQRMFAEARARMNGGVPPVAKQQPEVEEEANLEADS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031511`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031511

Location Chr07:6966369-6967436 (+)

Description Similar to DR1: Protein Dr1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23090`	Protein Dr1 homolog.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031511 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0016480 negative regulation of transcription by RNA polymerase III Biological Process

GO:0017055 negative regulation of RNA polymerase II transcription preinitiation complex assembly Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process

GO:0051302 regulation of cell division Biological Process

GO:0051726 regulation of cell cycle Biological Process

KEGG gene cross-reference

afm:AFUA_3G02340

ath:AT5G23090

ddi:DDB_G0269638

rno:289881

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.887

Rank 1 · LXL04_031511 · OH-1004

Cytoplasm0.302

Rank 2 · LXL04_031511 · OH-1004

Mitochondrion0.027

Rank 3 · LXL04_031511 · OH-1004

Cell membrane0.022

Rank 4 · LXL04_031511 · OH-1004

Endoplasmic reticulum0.015

Rank 5 · LXL04_031511 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00808.30CBFD_NFYB_HMF14-48 aa

PF00808.30CBFD_NFYB_HMF79-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031511	`PF00808.30`	CBFD_NFYB_HMF	14	48	1.8e-16	60.9
LXL04_031511	`PF00808.30`	CBFD_NFYB_HMF	79	110	1.8e-16	60.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P49592`	Arabidopsis thaliana	Protein Dr1 homolog	66.845%	Swiss-Prot	strong database homology

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