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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_031463
Reference: OH-1004 Chr: Chr07 Coordinates: 6272054-6273603 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

951 bp · LXL04_031463|LXL04_031463|OH1004|cDNA

ATGACTCAACCATCAGTTATTTTAGCAACTGCTAGCTATGATCACACCATTAGGTTCTGGGAGGCCAAAAGTGGACGCTGCTATCGGACCATTCAGTATCCAGAATCTCAAGTTAATCGGCTAGAGATAACTCCAGATAAGAGATACCTAGCTGCTGCAGGCAACCCACACATTCGACTTTTTGATGTTAACTCCACCAGCCCTCAACCCGTTATGAGCTATGATTCACACACGAGCAATGTGATGGCTGTGGGATTCCA...

CDS

Download CDS FASTA

951 bp · LXL04_031463|LXL04_031463|OH1004|CDS

ATGACTCAACCATCAGTTATTTTAGCAACTGCTAGCTATGATCACACCATTAGGTTCTGGGAGGCCAAAAGTGGACGCTGCTATCGGACCATTCAGTATCCAGAATCTCAAGTTAATCGGCTAGAGATAACTCCAGATAAGAGATACCTAGCTGCTGCAGGCAACCCACACATTCGACTTTTTGATGTTAACTCCACCAGCCCTCAACCCGTTATGAGCTATGATTCACACACGAGCAATGTGATGGCTGTGGGATTCCA...

Protein

Download Protein FASTA

316 aa · LXL04_031463|LXL04_031463|OH1004|PROTEIN

MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPESQVNRLEITPDKRYLAAAGNPHIRLFDVNSTSPQPVMSYDSHTSNVMAVGFQCDGKWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNKGTCYVWRLLRGTQTMTNFEPLHKLQAHDGYILKCLLSPEFCEPQRYLATASSDSTVKIWNVDGFTLEKTLVGHQRWV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_031463
TK1151 IDTkA08G107970
OH-1004 IDLXL04_031463
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_031463
LocationChr07:6272054-6273603 (-)
DescriptionSimilar to LST8: Target of rapamycin complex subunit LST8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18140 Component of TORC1 complex, which is an essential cell growth regulator that controls plant development.
Mutations in the Arabidopsis homolog of LST8/GβL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days.2012 · DOI: 10.1105/tpc.111.091306
Mutations in the Arabidopsis Lst8 and Raptor genes encoding partners of the TOR complex, or inhibition of TOR activity decrease abscisic acid (ABA) synthesis.2015 · DOI: 10.1016/j.bbrc.2015.10.028
At2g22040 Probable non-functional protein. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0681700 Component of TORC1 complex, which is an essential cell growth regulator that controls plant development.
Evolutionary conservation of TORC1 components, TOR, Raptor, and LST8, between rice and yeast.2015 · DOI: 10.1007/s00438-015-1056-0
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031463 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0007584 response to nutrient Biological Process
GO:0009267 cellular response to starvation Biological Process
GO:0030435 sporulation resulting in formation of a cellular spore Biological Process
GO:0030838 positive regulation of actin filament polymerization Biological Process
GO:0031929 TOR signaling Biological Process
GO:0032956 regulation of actin cytoskeleton organization Biological Process
GO:0038202 TORC1 signaling Biological Process
GO:0038203 TORC2 signaling Biological Process
GO:0043327 chemotaxis to cAMP Biological Process
GO:0043520 regulation of myosin II filament assembly Biological Process
GO:0048571 long-day photoperiodism Biological Process
KEGG gene cross-reference
ath:AT2G22040
ath:AT3G18140
ddi:DDB_G0292592
dosa:Os03g0681700
osa:4333729
spo:2540645
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.517
Rank 1 · LXL04_031463 · OH-1004
Nucleus0.445
Rank 2 · LXL04_031463 · OH-1004
Lysosome / Vacuole0.121
Rank 3 · LXL04_031463 · OH-1004
Cell membrane0.086
Rank 4 · LXL04_031463 · OH-1004
Golgi apparatus0.071
Rank 5 · LXL04_031463 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25173.2Beta-prop_WDR3_1st5-55 aa
PF24805.2EIF3I5-109 aa
PF25175.2Beta-prop_WDR56-194 aa
PF25172.2Beta-prop_WDR3_2nd6-109 aa
PF25174.2Beta-prop_THOC37-66 aa
PF24814.2WD40_Prp197-112 aa
PF23381.2Beta-prop_IFT122_1st7-70 aa
PF23414.2Beta-prop_EML_27-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_031463PF25173.2Beta-prop_WDR3_1st5551.9e-51175.1
LXL04_031463PF24805.2EIF3I51091.5e-2280.9
LXL04_031463PF25175.2Beta-prop_WDR561949e-52176.9
LXL04_031463PF25172.2Beta-prop_WDR3_2nd61091.6e-30107.1
LXL04_031463PF25174.2Beta-prop_THOC37662.5e-50171.7
LXL04_031463PF24814.2WD40_Prp1971125.3e-45154.4
LXL04_031463PF23381.2Beta-prop_IFT122_1st7701.8e-43149.6
LXL04_031463PF23414.2Beta-prop_EML_271096.4e-30105.1
LXL04_031463PF25168.2Beta-prop_WDR36-Utp21_2nd71103.9e-2899.4
LXL04_031463PF25047.1Beta-prop_TEP1_2nd71106.2e-2588.5
LXL04_031463PF24782.3WD40_MABP1-WDR62_2nd71071.1e-2281.2
LXL04_031463PF24817.2WD40_WDHD1_1st81141.2e-31110.7
LXL04_031463PF23393.3Beta-prop_WDR90_POC16_2nd8965.4e-2279.1
LXL04_031463PF23409.2Beta-prop_EML101084.3e-1969.7
LXL04_031463PF30552.1CFAP251_N101526.4e-1246.0
LXL04_031463PF25171.2Beta-prop_WDR36-Utp21_1st121152.1e-1660.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LV27Arabidopsis thalianaTarget of rapamycin complex subunit LST8-186.408%Swiss-Protstrong database homology
F4IIK6Arabidopsis thalianaNon-functional target of rapamycin complex subunit LST8-271.287%Swiss-Protstrong database homology
Q9AYE4Oryza sativa subsp. japonicaTarget of rapamycin complex subunit LST888.179%Swiss-Protstrong database homology

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