LXL04_031431 | RubberDandelionOmics

Gene overview

LXL04_031431

Reference: OH-1004 Chr: Chr07 Coordinates: 5843411-5844954 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · LXL04_031431|LXL04_031431|OH1004|cDNA

AAAAGAGCCCCTTCGGTACTCACTTCTACTTCTACTTCTACTTCTACCATCTGCCAAAACGAGTCTGCCTTCTTACGATACTATACTTTTCTACGACGGCGACGACAGCTTCCCCTAATTGGAAAATTAAAATTGATGGAAGGTACTGGTATCAAATTGTTTGGGAAGAAAATTGCGTGTCCAGAAATCGGCAAAATTACTAATCATCCAGTCCTAtccaccgccgccgccgccgcAGTGGAGTCTAGCGATGGTGTTCA...

CDS

Download CDS FASTA

1152 bp · LXL04_031431|LXL04_031431|OH1004|CDS

TTGATGGAAGGTACTGGTATCAAATTGTTTGGGAAGAAAATTGCGTGTCCAGAAATCGGCAAAATTACTAATCATCCAGTCCTATCCACCGCCGCCGCCGCCGCAGTGGAGTCTAGCGATGGTGTTCATAATCAACAGGGCGGTTATGATCTCGATCATGGTTTAACGATGGATGAGAAGAATTGTTTGCAAGAAGATAAAGAAAACAGAGAACACTCACATGAGGATCATGTAAGAGAAAAGAAACAAAAAGATGGCAA...

Protein

Download Protein FASTA

383 aa · LXL04_031431|LXL04_031431|OH1004|PROTEIN

MMEGTGIKLFGKKIACPEIGKITNHPVLSTAAAAAVESSDGVHNQQGGYDLDHGLTMDEKNCLQEDKENREHSHEDHVREKKQKDGNTETPMAGDADNALKKPDKILPCPRCNSMDTKFCYYNNYNVRQPRHFCKSCQRYWTAGGTMRNMPVGSGRRKNKNPTSRCQFITVSQEAFQASQIELGNGSNGVRNVLPKLISFGSDSPEFNYRNKENGDDCSSGSTVTTSNSFVEKMQERNGFHSHIPVPTTPWSYNPWNCAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031431`
TK1151 ID	TkA08G106170
OH-1004 ID	LXL04_031431
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 90.118 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031431

Location Chr07:5843411-5844954 (+)

Description Similar to CDF3: Cyclic dof factor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47500`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release
`At5g62430`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g39660`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.2009 · DOI: 10.1016/j.devcel.2009.06.015
`At1g69570`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release
`At1g26790`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031431 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G69570

ath:AT3G47500

ath:AT5G39660

ath:AT5G62430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · LXL04_031431 · OH-1004

Cytoplasm0.081

Rank 2 · LXL04_031431 · OH-1004

Cell membrane0.033

Rank 3 · LXL04_031431 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_031431 · OH-1004

Plastid0.011

Rank 5 · LXL04_031431 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02701.21Zn_ribbon_Dof105-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031431	`PF02701.21`	Zn_ribbon_Dof	105	161	2.5e-32	111.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LFV3`	Arabidopsis thaliana	Cyclic dof factor 3	42.494%	Swiss-Prot	moderate database homology
`Q8W1E3`	Arabidopsis thaliana	Cyclic dof factor 1	44.051%	Swiss-Prot	moderate database homology
`Q93ZL5`	Arabidopsis thaliana	Cyclic dof factor 2	37.527%	Swiss-Prot	moderate database homology
`Q9SEZ3`	Arabidopsis thaliana	Cyclic dof factor 5	39.799%	Swiss-Prot	moderate database homology
`Q9LQX4`	Arabidopsis thaliana	Dof zinc finger protein DOF1.3	32.493%	Swiss-Prot	moderate database homology

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