LXL04_031428 | RubberDandelionOmics

Gene overview

LXL04_031428

Reference: OH-1004 Chr: Chr07 Coordinates: 5818401-5819963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1431 bp · LXL04_031428|LXL04_031428|OH1004|cDNA

ATGACATCAATCCCAGAGAAGAGCGCATTTATTTCGCGATCGTTTGCATGCCTATTTGCCGTCTCAATTTTATTCCTAATTCTTTCTTCATCGATTCTATTTCAATTTGGTGATAACTCTTTAGTACCCAGATCAATTTACAAGTTAATCATCGTGCAAACCACACGAGATTACATCAAACCTGTTGAAACCAGTGTGCCGTTTGTTTCCTTATCTTGTAAAGAATCATGTTCCACACCAAACCCCGTCAAATCCGCCAT...

CDS

Download CDS FASTA

1431 bp · LXL04_031428|LXL04_031428|OH1004|CDS

ATGACATCAATCCCAGAGAAGAGCGCATTTATTTCGCGATCGTTTGCATGCCTATTTGCCGTCTCAATTTTATTCCTAATTCTTTCTTCATCGATTCTATTTCAATTTGGTGATAACTCTTTAGTACCCAGATCAATTTACAAGTTAATCATCGTGCAAACCACACGAGATTACATCAAACCTGTTGAAACCAGTGTGCCGTTTGTTTCCTTATCTTGTAAAGAATCATGTTCCACACCAAACCCCGTCAAATCCGCCAT...

Protein

Download Protein FASTA

476 aa · LXL04_031428|LXL04_031428|OH1004|PROTEIN

MTSIPEKSAFISRSFACLFAVSILFLILSSSILFQFGDNSLVPRSIYKLIIVQTTRDYIKPVETSVPFVSLSCKESCSTPNPVKSAICDQTQALLKVFMYDLPPEFHFGLLGWKGARNQIWPDVSKPNRIPSYPGGLNLQHSMEYWLTLDLLSSISPNISRPCSAILVHNSTQADVIFVPFFSSLSYNRHSKIHGADKTTMDKILQEKLVKFLKGRDEWRRTGGKDHIIMAHHPNSMLLARKHLGGARFLLADFGRYNSQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031428`
TK1151 ID	TkA08G106060
OH-1004 ID	LXL04_031428
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031428

Location Chr07:5818401-5819963 (+)

Description Similar to ARAD1: Probable arabinosyltransferase ARAD1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35100`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis.2006 · DOI: 10.1104/pp.105.072744 Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g44930`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g33290`	Involved in pectin biosynthesis.	Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.050906
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0180000`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031428 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010398 xylogalacturonan metabolic process Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0035884 arabinan biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G35100

ath:AT3G42180

ath:AT5G33290

ath:AT5G44930

dosa:Os10g0180000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.823

Rank 1 · LXL04_031428 · OH-1004

Endoplasmic reticulum0.078

Rank 2 · LXL04_031428 · OH-1004

Cell membrane0.050

Rank 3 · LXL04_031428 · OH-1004

Extracellular0.045

Rank 4 · LXL04_031428 · OH-1004

Nucleus0.041

Rank 5 · LXL04_031428 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016.21Exostosin_GT4794-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031428	`PF03016.21`	Exostosin_GT47	94	406	4.6e-59	200.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6DBG8`	Arabidopsis thaliana	Probable arabinosyltransferase ARAD1	39.050%	Swiss-Prot	moderate database homology
`Q9FLA5`	Arabidopsis thaliana	Probable arabinosyltransferase ARAD2	39.946%	Swiss-Prot	moderate database homology
`Q94AA9`	Arabidopsis thaliana	Xylogalacturonan beta-1,3-xylosyltransferase	26.027%	Swiss-Prot	weak database homology
`Q3EAR7`	Arabidopsis thaliana	Probable glycosyltransferase At3g42180	32.927%	Swiss-Prot	weak database homology
`Q33AH8`	Oryza sativa subsp. japonica	Probable glucuronosyltransferase GUT1	25.061%	Swiss-Prot	weak database homology

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