LXL04_031414 | RubberDandelionOmics

Gene overview

LXL04_031414

Reference: OH-1004 Chr: Chr07 Coordinates: 5522289-5523689 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1401 bp · LXL04_031414|LXL04_031414|OH1004|cDNA

ATGGAAGAGGTACAAGATGAGCAGCTTTTGAGCCTTGGGCTTGCAATCGTCATCGATTCTAGTCGTGAAAGAAAGATGAAACGAAAGAGATCAAGGGAAGTTTTTAAGTCTTTGGATACGAATGTAGTATCCGAAGGAAGTATCTTCAGTCTTTTGGAAATGAGGGAAATCATGTTAAAGAAAGAAAACAAGACCGACAGTACTATAATCACCGGCGAAGATGGAAAAGGGCTGCGACTGATCCATTTATTACTCGTTGC...

CDS

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1401 bp · LXL04_031414|LXL04_031414|OH1004|CDS

ATGGAAGAGGTACAAGATGAGCAGCTTTTGAGCCTTGGGCTTGCAATCGTCATCGATTCTAGTCGTGAAAGAAAGATGAAACGAAAGAGATCAAGGGAAGTTTTTAAGTCTTTGGATACGAATGTAGTATCCGAAGGAAGTATCTTCAGTCTTTTGGAAATGAGGGAAATCATGTTAAAGAAAGAAAACAAGACCGACAGTACTATAATCACCGGCGAAGATGGAAAAGGGCTGCGACTGATCCATTTATTACTCGTTGC...

Protein

Download Protein FASTA

466 aa · LXL04_031414|LXL04_031414|OH1004|PROTEIN

MEEVQDEQLLSLGLAIVIDSSRERKMKRKRSREVFKSLDTNVVSEGSIFSLLEMREIMLKKENKTDSTIITGEDGKGLRLIHLLLVAATSLDENNLDSAVDNLSELYQNVSLTGDSVQRVAAYFADGLVARLLTRRSPFHAMIMKEPAPEDEFLAYMELYKVSPYHQFAHFTANQEIMDAFEREEEINNNRSLHVVDLDISYGFQWPSLMQSLSEKATVGNRVSLRITGFGKSMEELEETEARLVGFAKSFRNLIFEFEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031414`
TK1151 ID	TkA08G105390
OH-1004 ID	LXL04_031414
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031414

Location Chr07:5522289-5523689 (-)

Description Similar to RAM1: GRAS family protein RAM1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0124300`	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031414 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0007584 response to nutrient Biological Process

GO:0008356 asymmetric cell division Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009630 gravitropism Biological Process

GO:0009956 radial pattern formation Biological Process

GO:0010247 detection of phosphate ion Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0048366 leaf development Biological Process

KEGG gene cross-reference

dosa:Os11g0124300

mtr:11438339

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.752

Rank 1 · LXL04_031414 · OH-1004

Cytoplasm0.250

Rank 2 · LXL04_031414 · OH-1004

Cell membrane0.068

Rank 3 · LXL04_031414 · OH-1004

Endoplasmic reticulum0.033

Rank 4 · LXL04_031414 · OH-1004

Plastid0.025

Rank 5 · LXL04_031414 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514.21GRAS80-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031414	`PF03514.21`	GRAS	80	461	3.7e-90	303.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q2RB59`	Oryza sativa subsp. japonica	Protein SCARECROW 1	36.082%	Swiss-Prot	moderate database homology

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