LXL04_031347 | RubberDandelionOmics

Gene overview

LXL04_031347

Reference: OH-1004 Chr: Chr07 Coordinates: 4842120-4853996 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4377 bp · LXL04_031347|LXL04_031347|OH1004|cDNA

GTCTTGGCAGCTAGGAAGGATATTGTATCATGCGGAGTTTACGGAGGAGCGTAtggaggtcctcaccactacgacttcatcttagcggcgttcggatcgagACCATTCAAAGTGTTCAATTCTTGGTTCCAGGAGAAGAGTTTCGAGCAGGTAGTCTCTTGGGCTACAGAGGTGGAAGGAGGGGTAGGAGGAGAGGCAATCAAACTgaaaaacaaatttaaaaatttaaatGAGAACATAAAAGTGTGGTGGAAGAAGAC...

CDS

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4374 bp · LXL04_031347|LXL04_031347|OH1004|CDS

TTGGCAGCTAGGAAGGATATTGTATCATGCGGAGTTTACGGAGGAGCGTATGGAGGTCCTCACCACTACGACTTCATCTTAGCGGCGTTCGGATCGAGACCATTCAAAGTGTTCAATTCTTGGTTCCAGGAGAAGAGTTTCGAGCAGGTAGTCTCTTGGGCTACAGAGGTGGAAGGAGGGGTAGGAGGAGAGGCAATCAAACTGAAAAACAAATTTAAAAATTTAAATGAGAACATAAAAGTGTGGTGGAAGAAGACAAG...

Protein

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1457 aa · LXL04_031347|LXL04_031347|OH1004|PROTEIN

MAARKDIVSCGVYGGAYGGPHHYDFILAAFGSRPFKVFNSWFQEKSFEQVVSWATEVEGGVGGEAIKLKNKFKNLNENIKVWWKKTSAEREITKKEVEEKLKDIEKKIDGGVASQEELADRLKLREKIIKMEKVKMEDMQQKAKITSFTWNIEGDENSKYYHAVLNKRRRQVAIKGIKKMESGWSSRKCIRDPNSRFKKLSDEAVRRLEKVVSEEEVKVAVWACGNDKALGPDGFSFGFVKKFWEVLKVDIINFVEEFFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031347`
TK1151 ID	TkA08G102500
OH-1004 ID	LXL04_031347
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 30.130 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031347

Location Chr07:4842120-4853996 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g35510`	O-fucosyltransferase 9.	No verified direct reference in this release
`At2g01480`	Glycosyltransferase that plays a role in cell adhesion.	No verified direct reference in this release
`At1g14970`	O-fucosyltransferase 4.	No verified direct reference in this release
`At1g38131`	O-fucosyltransferase 11.	No verified direct reference in this release
`At1g38065`	O-fucosyltransferase 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031347 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0007155 cell adhesion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14970

ath:AT1G35510

ath:AT1G38065

ath:AT1G38131

ath:AT2G01480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.242

Rank 1 · LXL04_031347 · OH-1004

Golgi apparatus0.205

Rank 2 · LXL04_031347 · OH-1004

Plastid0.132

Rank 3 · LXL04_031347 · OH-1004

Endoplasmic reticulum0.130

Rank 4 · LXL04_031347 · OH-1004

Nucleus0.092

Rank 5 · LXL04_031347 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078.33RVT_1276-535 aa

PF13966.12zf-RVT764-830 aa

PF10250.16O-FucT1050-1379 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031347	`PF00078.33`	RVT_1	276	535	1.5e-32	113.9
LXL04_031347	`PF13966.12`	zf-RVT	764	830	2.2e-15	57.8
LXL04_031347	`PF10250.16`	O-FucT	1050	1379	1.1e-95	321.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H1E6`	Arabidopsis thaliana	O-fucosyltransferase 9	65.577%	Swiss-Prot	weak database homology
`Q9ZVF7`	Arabidopsis thaliana	Protein ESMERALDA 1	54.240%	Swiss-Prot	weak database homology
`F4HXW9`	Arabidopsis thaliana	O-fucosyltransferase 4	52.389%	Swiss-Prot	weak database homology
`Q8GUM0`	Arabidopsis thaliana	O-fucosyltransferase 11	53.280%	Swiss-Prot	weak database homology
`Q8LNP3`	Arabidopsis thaliana	O-fucosyltransferase 10	58.838%	Swiss-Prot	weak database homology

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