Gene Card
Gene overview
cDNA / CDS / Protein Sequences
435 bp · LXL04_031298|LXL04_031298|OH1004|cDNA
ATGGCCGACGATGACTATGATATGGACGCCGGAGGTTACGACGATGAGCCAGCAGAGCCTGATCTCGAAGAAGGGGCTGAGGAAGAGATTGATGGAGATAAACCGGATGAAGACGTTCCTGATGCACTTTTAGGCGACGATGATAAGGAAGAACAGGAAGCTGTAGAAAAACCTCGGAAGACTATAAAGTATATGACAAAATATGAAAGGGCTAGAATCTTGGGTACTCGTGCTCTGCAAATTAGCATGAATGCTCCAGT...
435 bp · LXL04_031298|LXL04_031298|OH1004|CDS
ATGGCCGACGATGACTATGATATGGACGCCGGAGGTTACGACGATGAGCCAGCAGAGCCTGATCTCGAAGAAGGGGCTGAGGAAGAGATTGATGGAGATAAACCGGATGAAGACGTTCCTGATGCACTTTTAGGCGACGATGATAAGGAAGAACAGGAAGCTGTAGAAAAACCTCGGAAGACTATAAAGTATATGACAAAATATGAAAGGGCTAGAATCTTGGGTACTCGTGCTCTGCAAATTAGCATGAATGCTCCAGT...
Protein
Download Protein FASTA144 aa · LXL04_031298|LXL04_031298|OH1004|PROTEIN
MADDDYDMDAGGYDDEPAEPDLEEGAEEEIDGDKPDEDVPDALLGDDDKEEQEAVEKPRKTIKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031298 |
|---|---|
| TK1151 ID | TkA08G100650 |
| OH-1004 ID | LXL04_031298 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031298 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:4319874-4320932 (-) | |||||||||
| Description | Similar to NRPB6A: DNA-directed RNA polymerases II, IV and V subunit 6A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006360 transcription by RNA polymerase I Biological Process GO:0006362 transcription elongation by RNA polymerase I Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0006386 termination of RNA polymerase III transcription Biological Process GO:0042797 tRNA transcription by RNA polymerase III Biological Process GO:0000418 RNA polymerase IV complex Cellular Component GO:0000419 RNA polymerase V complex Cellular Component GO:0001650 fibrillar center Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G04630 ath:AT5G51940 mmu:69833 pon:100174705 rno:83503 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01192.28RNA_pol_Rpb663-112 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031298 | PF01192.28 | RNA_pol_Rpb6 | 63 | 112 | 5e-12 | 46.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.