LXL04_031287 | RubberDandelionOmics

Gene overview

LXL04_031287

Reference: OH-1004 Chr: Chr07 Coordinates: 4128727-4131166 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

645 bp · LXL04_031287|LXL04_031287|OH1004|cDNA

ATGGGTGATAATCAGCAGCACAACTATGGTTCAAACATCGGGCATACATCAAGCGCGACTGTGATCCCAGCAAAAAAGAAGCATGTGTCAACTATGATAGCTGAGAAGGCCGTTAAAAAGGTTGCATCGGCTGTAGAAACTTCTTCCTCCGTCGTCGTCTCTCTGTCCCGCGCTTCTTCTGGCGTGGTCCGTAACTCCACTCCGACGGAAACAGGTTTCTGCTCCGACGATTTCCGGCGGACTGCTGTGTTCCTTCCGGT...

CDS

Download CDS FASTA

645 bp · LXL04_031287|LXL04_031287|OH1004|CDS

ATGGGTGATAATCAGCAGCACAACTATGGTTCAAACATCGGGCATACATCAAGCGCGACTGTGATCCCAGCAAAAAAGAAGCATGTGTCAACTATGATAGCTGAGAAGGCCGTTAAAAAGGTTGCATCGGCTGTAGAAACTTCTTCCTCCGTCGTCGTCTCTCTGTCCCGCGCTTCTTCTGGCGTGGTCCGTAACTCCACTCCGACGGAAACAGGTTTCTGCTCCGACGATTTCCGGCGGACTGCTGTGTTCCTTCCGGT...

Protein

Download Protein FASTA

214 aa · LXL04_031287|LXL04_031287|OH1004|PROTEIN

MGDNQQHNYGSNIGHTSSATVIPAKKKHVSTMIAEKAVKKVASAVETSSSVVVSLSRASSGVVRNSTPTETGFCSDDFRRTAVFLPVCKRQVSYIFGDNPLGMSYVVGYGNNYPKQVHHRGASIAWDHQWHSCAEGSAWLNSSRKSQLPIENIIGGILLCIFLFRDFLPIGMAASSLLANFSNINVHCLILCIKNVHDFFHLVNKVMYHDNGKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031287`
TK1151 ID	TkA08G099970
OH-1004 ID	LXL04_031287
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 53.271 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031287

Location Chr07:4128727-4131166 (-)

Description Similar to KOR2: Endoglucanase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65610`	Endoglucanase 7.	No verified direct reference in this release
`At5g49720`	Required for cellulose microfibril formation.	KORRIGAN, an Arabidopsis endo-1,4-beta-glucanase, localizes to the cell plate by polarized targeting and is essential for cytokinesis.2000 · DOI: 10.1105/tpc.12.7.1137 Temperature-sensitive alleles of RSW2 link the KORRIGAN endo-1,4-beta-glucanase to cellulose synthesis and cytokinesis in Arabidopsis.2001 · DOI: 10.1104/pp.126.1.278 An Arabidopsis endo-1,4-beta-D-glucanase involved in cellulose synthesis undergoes regulated intracellular cycling.2005 · DOI: 10.1105/tpc.105.036228
`At4g24260`	Endoglucanase 21.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0736300`	Endoglucanase 10.	No verified direct reference in this release
`Os03g0329500`	Involved in cell wall assembly during cell elongation.	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation.2006 · DOI: 10.1007/s11103-005-2972-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031287 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0030245 cellulose catabolic process Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0048367 shoot system development Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005769 early endosome Cellular Component

KEGG gene cross-reference

ath:AT1G65610

ath:AT4G24260

ath:AT5G49720

dosa:Os03g0329500

dosa:Os03g0736300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.332

Rank 1 · LXL04_031287 · OH-1004

Nucleus0.299

Rank 2 · LXL04_031287 · OH-1004

Extracellular0.171

Rank 3 · LXL04_031287 · OH-1004

Cell membrane0.134

Rank 4 · LXL04_031287 · OH-1004

Endoplasmic reticulum0.122

Rank 5 · LXL04_031287 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759.26Glyco_hydro_980-158 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031287	`PF00759.26`	Glyco_hydro_9	80	158	8e-18	65.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04478`	Arabidopsis thaliana	Endoglucanase 7	41.053%	Swiss-Prot	weak database homology
`Q38890`	Arabidopsis thaliana	Endoglucanase 25	38.235%	Swiss-Prot	weak database homology
`Q9STW8`	Arabidopsis thaliana	Endoglucanase 21	41.304%	Swiss-Prot	weak database homology
`Q84R49`	Oryza sativa subsp. japonica	Endoglucanase 10	39.583%	Swiss-Prot	weak database homology
`P0C1U4`	Oryza sativa subsp. japonica	Endoglucanase 9	42.391%	Swiss-Prot	weak database homology

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