LXL04_031239 | RubberDandelionOmics

Gene overview

LXL04_031239

Reference: OH-1004 Chr: Chr07 Coordinates: 2992918-2996888 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2514 bp · LXL04_031239|LXL04_031239|OH1004|cDNA

ATGttgaaaaagaaacaagaaggAAAACTCTTGACAGCAAAACAGAAGGAAGAAGCCAGAAGATTGGAAGCAATGAGGAACCAAATACTTGCAAATGCTGGTGGTTTGCCTGTATCCGCACCTACAAAACGACCCAAGTACCGGTCAAAGAAGTCAAAGCCACATGCAAATGGCAAAACCCTTTCCACCAATCCTACTGAAGTCACAGAAGAAAAAACCGATGATGTGGAAGTTGAAAAGACTGATGACATGGACATGGA...

CDS

Download CDS FASTA

2487 bp · LXL04_031239|LXL04_031239|OH1004|CDS

ATGTTGAAAAAGAAACAAGAAGGAAAACTCTTGACAGCAAAACAGAAGGAAGAAGCCAGAAGATTGGAAGCAATGAGGAACCAAATACTTGCAAATGCTGGTGGTTTGCCTGTATCCGCACCTACAAAACGACCCAAGTACCGGTCAAAGAAGTCAAAGCCACATGCAAATGGCAAAACCCTTTCCACCAATCCTACTGAAGTCACAGAAGAAAAAACCGATGATGTGGAAGTTGAAAAGACTGATGACATGGACATGGA...

Protein

Download Protein FASTA

828 aa · LXL04_031239|LXL04_031239|OH1004|PROTEIN

MLKKKQEGKLLTAKQKEEARRLEAMRNQILANAGGLPVSAPTKRPKYRSKKSKPHANGKTLSTNPTEVTEEKTDDVEVEKTDDMDMEKTEESQSIEENGNKEEEEEDDDDDDEWDAKSWDDADLKLPGISAFADEEESPAPQPHHKPEPKKETKNGNDSQTTQVHETKQKESQPATTVITNNKTKGKKEEKKKEEDEGEKTLRSPICCIMGHVDTGKTKLLDCIRRTNVQEGEAGGITQQIGATYIPAENIRERTKELKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031239`
TK1151 ID	TkA08G096420
OH-1004 ID	LXL04_031239
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	94.900
Protein coverage (%)	TK1151 98.879 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_031239`
Location	Chr07:2992918-2996888 (+)
Description	Similar to SPAC56F8.03: Eukaryotic translation initiation factor 5B (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031239` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0002183 cytoplasmic translational initiation Biological Process GO:0006413 translational initiation Biological Process GO:0006446 regulation of translational initiation Biological Process GO:0042255 ribosome assembly Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0033290 eukaryotic 48S preinitiation complex Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003743 translation initiation factor activity Molecular Function GO:0003924 GTPase activity Molecular Function
KEGG gene cross-reference	cthr:CTHT_0029840 hsa:9669 mmu:226982 rno:308306 spo:2543241 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.606

Rank 1 · LXL04_031239 · OH-1004

Nucleus0.306

Rank 2 · LXL04_031239 · OH-1004

Cell membrane0.095

Rank 3 · LXL04_031239 · OH-1004

Mitochondrion0.072

Rank 4 · LXL04_031239 · OH-1004

Endoplasmic reticulum0.063

Rank 5 · LXL04_031239 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00009.34GTP_EFTU205-414 aa

PF01926.30MMR_HSR1208-328 aa

PF03144.32GTP_EFTU_D2441-515 aa

PF11987.14IF-2529-643 aa

PF14578.13GTP_EFTU_D4664-729 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031239	`PF00009.34`	GTP_EFTU	205	414	2.1e-34	119.5
LXL04_031239	`PF01926.30`	MMR_HSR1	208	328	3e-06	28.0
LXL04_031239	`PF03144.32`	GTP_EFTU_D2	441	515	1.6e-12	48.4
LXL04_031239	`PF11987.14`	IF-2	529	643	7.6e-23	81.4
LXL04_031239	`PF14578.13`	GTP_EFTU_D4	664	729	5.3e-13	49.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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