LXL04_031155 | RubberDandelionOmics

Gene overview

LXL04_031155

Reference: OH-1004 Chr: Chr07 Coordinates: 1397849-1401054 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_031155|LXL04_031155|OH1004|cDNA

ATGCAAAAAAAGAGATGGAGGAAGTTAGGGTTAATGCGACGATTGCTAACGTGCGCAATAGCTTCAATTTCATTGGTGGCTTTGCTTTCTGGTCATGTGCATCTGTTCTTCCCCCCTTCACAAGTTTCTATGCTTCCTGATCCTTACAAGTTTCCAACGCAACATGAAATTCAATACCAAAAGTTGAGCAGAGAGCGAAGCTGGATTCAACCCCATTTGTCAAGAGCTCCTCTCCCTGCTCTCAAGTTGGATGGTGCCAA...

CDS

Download CDS FASTA

1584 bp · LXL04_031155|LXL04_031155|OH1004|CDS

ATGCAAAAAAAGAGATGGAGGAAGTTAGGGTTAATGCGACGATTGCTAACGTGCGCAATAGCTTCAATTTCATTGGTGGCTTTGCTTTCTGGTCATGTGCATCTGTTCTTCCCCCCTTCACAAGTTTCTATGCTTCCTGATCCTTACAAGTTTCCAACGCAACATGAAATTCAATACCAAAAGTTGAGCAGAGAGCGAAGCTGGATTCAACCCCATTTGTCAAGAGCTCCTCTCCCTGCTCTCAAGTTGGATGGTGCCAA...

Protein

Download Protein FASTA

527 aa · LXL04_031155|LXL04_031155|OH1004|PROTEIN

MQKKRWRKLGLMRRLLTCAIASISLVALLSGHVHLFFPPSQVSMLPDPYKFPTQHEIQYQKLSRERSWIQPHLSRAPLPALKLDGANSSLEFHKLWKPPPNRDFAPCVDPSSSYIVPQETRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDTSNFSDVFDEDYFITSLADDVKIIRKLPKELTTATRAVKHFRSWSGIDYYEQEIASLWDDYQVIRAAKSDSRLANNNLPPDIQKLRCRACYKAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031155`
TK1151 ID	TkA08G090170
OH-1004 ID	LXL04_031155
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 74.573 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031155

Location Chr07:1397849-1401054 (+)

Description Similar to OFUT7: O-fucosyltransferase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22460`	O-fucosyltransferase 7.	No verified direct reference in this release
`At5g64600`	O-fucosyltransferase 38.	No verified direct reference in this release
`At5g35570`	O-fucosyltransferase 35.	No verified direct reference in this release
`At2g37980`	O-fucosyltransferase 19.	No verified direct reference in this release
`At5g01100`	Glycosyltransferase required for normal cell adhesion and cell wall integrity.	The FRIABLE1 gene product affects cell adhesion in Arabidopsis.2012 · DOI: 10.1371/journal.pone.0042914

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031155 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0007155 cell adhesion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080157 regulation of plant-type cell wall organization or biogenesis Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G22460

ath:AT2G37980

ath:AT5G01100

ath:AT5G35570

ath:AT5G64600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.777

Rank 1 · LXL04_031155 · OH-1004

Cell membrane0.076

Rank 2 · LXL04_031155 · OH-1004

Endoplasmic reticulum0.067

Rank 3 · LXL04_031155 · OH-1004

Cytoplasm0.051

Rank 4 · LXL04_031155 · OH-1004

Extracellular0.047

Rank 5 · LXL04_031155 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250.16O-FucT123-435 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031155	`PF10250.16`	O-FucT	123	435	1.8e-103	347.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B7ZWR7`	Arabidopsis thaliana	O-fucosyltransferase 7	68.410%	Swiss-Prot	strong database homology
`F4KF16`	Arabidopsis thaliana	O-fucosyltransferase 38	60.970%	Swiss-Prot	strong database homology
`Q94BY4`	Arabidopsis thaliana	O-fucosyltransferase 35	46.756%	Swiss-Prot	moderate database homology
`Q9SH89`	Arabidopsis thaliana	O-fucosyltransferase 19	48.148%	Swiss-Prot	moderate database homology
`Q9LFC6`	Arabidopsis thaliana	Protein FRIABLE 1	47.500%	Swiss-Prot	moderate database homology

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