LXL04_031131 | RubberDandelionOmics

Gene overview

LXL04_031131

Reference: OH-1004 Chr: Chr07 Coordinates: 975253-977132 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1161 bp · LXL04_031131|LXL04_031131|OH1004|cDNA

ATGGCAGGGTTAAACACTCCCAAAAGCTTAGCCTCGTCATTGTATTCAATCAATAAGAAGAATGTAGCTTTTTCCAAGAGATTGGCCAAGAATTGGATTGTAATGGCAACTAAGCAGCAAGAAGATGGGCTGAGCTTGAATGCTTTAACAAGCAGTGAGCGTAGAGATGAGGTTATGATTGCTGCAAAAAGCTCACTTTCCAACTGCCTTTCCGAGACCAATCTTCATCACACCATCCCTGCTCTCAAATCCAAAACAAG...

CDS

Download CDS FASTA

1161 bp · LXL04_031131|LXL04_031131|OH1004|CDS

ATGGCAGGGTTAAACACTCCCAAAAGCTTAGCCTCGTCATTGTATTCAATCAATAAGAAGAATGTAGCTTTTTCCAAGAGATTGGCCAAGAATTGGATTGTAATGGCAACTAAGCAGCAAGAAGATGGGCTGAGCTTGAATGCTTTAACAAGCAGTGAGCGTAGAGATGAGGTTATGATTGCTGCAAAAAGCTCACTTTCCAACTGCCTTTCCGAGACCAATCTTCATCACACCATCCCTGCTCTCAAATCCAAAACAAG...

Protein

Download Protein FASTA

386 aa · LXL04_031131|LXL04_031131|OH1004|PROTEIN

MAGLNTPKSLASSLYSINKKNVAFSKRLAKNWIVMATKQQEDGLSLNALTSSERRDEVMIAAKSSLSNCLSETNLHHTIPALKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRVLASIPFKGQVLNDTSLWWFNQTNHIAPNAIIAVPDKNVTIAKKCVVFPVEFVVRGYVTGSTDTSLWTVYNNGVRNYCGNALPEGMVKNERLPANIITPTTKAADHDVPITPQEIVEQGLMSQADYDEASRKALSLFEYGQRVALEH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031131`
TK1151 ID	TkA08G088530
OH-1004 ID	LXL04_031131
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031131

Location Chr07:975253-977132 (+)

Description Similar to PUR7: Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21110`	Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031131 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006189 'de novo' IMP biosynthetic process Biological Process

GO:0009733 response to auxin Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G21110

ccr:CC_3242

lpf:lpl1640

lpp:lpp1647

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.597

Rank 1 · LXL04_031131 · OH-1004

Mitochondrion0.242

Rank 2 · LXL04_031131 · OH-1004

Nucleus0.206

Rank 3 · LXL04_031131 · OH-1004

Peroxisome0.091

Rank 4 · LXL04_031131 · OH-1004

Plastid0.051

Rank 5 · LXL04_031131 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01259.25SAICAR_synt86-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031131	`PF01259.25`	SAICAR_synt	86	332	2.5e-68	231.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P38025`	Arabidopsis thaliana	Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic	75.499%	Swiss-Prot	strong database homology

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