LXL04_031003 | RubberDandelionOmics

Gene overview

LXL04_031003

Reference: OH-1004 Chr: Chr06 Coordinates: 126603023-126604363 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1341 bp · LXL04_031003|LXL04_031003|OH1004|cDNA

ATGGGAAGCAGACGGGAGCCTTCAATTCACGACAAGGATTGTCTTAACGACGACATTAATCTACACAACTTATCCCCCATGACTGTTTCCAAAACCTCGGATTCCGGAATCTACGGCGCGGTGTTTAACCTAACCACAACGGTAATCGGCGCCGGAATCATGGCATTACCCGCCACCATGAAAGTTCTCGGCTTGGTCGCCGGAGTTGTTTTGATTCTCTTAATGGGTATTTTATCAGAAATCAGCGTCGAGTTGCTCAT...

CDS

Download CDS FASTA

1341 bp · LXL04_031003|LXL04_031003|OH1004|CDS

ATGGGAAGCAGACGGGAGCCTTCAATTCACGACAAGGATTGTCTTAACGACGACATTAATCTACACAACTTATCCCCCATGACTGTTTCCAAAACCTCGGATTCCGGAATCTACGGCGCGGTGTTTAACCTAACCACAACGGTAATCGGCGCCGGAATCATGGCATTACCCGCCACCATGAAAGTTCTCGGCTTGGTCGCCGGAGTTGTTTTGATTCTCTTAATGGGTATTTTATCAGAAATCAGCGTCGAGTTGCTCAT...

Protein

Download Protein FASTA

446 aa · LXL04_031003|LXL04_031003|OH1004|PROTEIN

MGSRREPSIHDKDCLNDDINLHNLSPMTVSKTSDSGIYGAVFNLTTTVIGAGIMALPATMKVLGLVAGVVLILLMGILSEISVELLIRFSVQCKATSYGEVVEQALGSPARIISEICIILNNAGVLVVYLIIVGDVMSGSPRHSGVIIQWFGTGIWENRRLVIFIVLIVFLAPLCALDKIESLSVTSGASVVLAVLFVIVASVVAFIMLVEGKTDPPRLIPDFSSKQAILDLLVVIPIMSNAYVCHFNIQPIYNELEGRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031003`
TK1151 ID	TkA07G444760
OH-1004 ID	LXL04_031003
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.900
Protein coverage (%)	TK1151 100.000 / OH-1004 88.117 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031003

Location Chr06:126603023-126604363 (+)

Description Similar to AVT6E: Amino acid transporter AVT6E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80510`	Amino acid transporter AVT6E.	No verified direct reference in this release
`At3g30390`	Amino acid transporter AVT6A.	No verified direct reference in this release
`At5g38820`	Amino acid transporter AVT6B.	No verified direct reference in this release
`At3g56200`	Amino acid transporter AVT6C.	No verified direct reference in this release
`At2g40420`	Amino acid transporter AVT6D.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031003 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G80510

ath:AT2G40420

ath:AT3G30390

ath:AT3G56200

ath:AT5G38820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.442

Rank 1 · LXL04_031003 · OH-1004

Lysosome / Vacuole0.265

Rank 2 · LXL04_031003 · OH-1004

Cytoplasm0.141

Rank 3 · LXL04_031003 · OH-1004

Endoplasmic reticulum0.131

Rank 4 · LXL04_031003 · OH-1004

Golgi apparatus0.088

Rank 5 · LXL04_031003 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03222.20Trp_Tyr_perm36-288 aa

PF01490.25Aa_trans37-439 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031003	`PF03222.20`	Trp_Tyr_perm	36	288	6.5e-10	39.4
LXL04_031003	`PF01490.25`	Aa_trans	37	439	1e-60	206.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8L9`	Arabidopsis thaliana	Amino acid transporter AVT6E	70.387%	Swiss-Prot	strong database homology
`Q9LI61`	Arabidopsis thaliana	Amino acid transporter AVT6A	40.724%	Swiss-Prot	moderate database homology
`F4KBM7`	Arabidopsis thaliana	Amino acid transporter AVT6B	41.505%	Swiss-Prot	moderate database homology
`Q9LYM2`	Arabidopsis thaliana	Amino acid transporter AVT6C	37.470%	Swiss-Prot	moderate database homology
`Q0WQJ3`	Arabidopsis thaliana	Amino acid transporter AVT6D	36.047%	Swiss-Prot	moderate database homology

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