LXL04_030997 | RubberDandelionOmics

Gene overview

LXL04_030997

Reference: OH-1004 Chr: Chr06 Coordinates: 126501934-126504249 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1569 bp · LXL04_030997|LXL04_030997|OH1004|cDNA

ATGGCGAAAGAGGAGACGTATATTGGATCGATAGATCAAGGAACAACAAGCACAAGATTCATCATTTACAACAAGAAAGCTGAAATCATCGGATCCCACCAAGTCGAGTTCACTCAATTCTGCCCACAAGCAGGATGGGTGGAGCATGATCCTATGGAGATTCTCGAAAGTGTGAGAATATGCGTATCAAAGACAATCGATAAAGCCACTGCCGATGGATTCAACATTGACAATGGCCTTAAAGCAATCGGAATTACAAA...

CDS

Download CDS FASTA

1569 bp · LXL04_030997|LXL04_030997|OH1004|CDS

ATGGCGAAAGAGGAGACGTATATTGGATCGATAGATCAAGGAACAACAAGCACAAGATTCATCATTTACAACAAGAAAGCTGAAATCATCGGATCCCACCAAGTCGAGTTCACTCAATTCTGCCCACAAGCAGGATGGGTGGAGCATGATCCTATGGAGATTCTCGAAAGTGTGAGAATATGCGTATCAAAGACAATCGATAAAGCCACTGCCGATGGATTCAACATTGACAATGGCCTTAAAGCAATCGGAATTACAAA...

Protein

Download Protein FASTA

522 aa · LXL04_030997|LXL04_030997|OH1004|PROTEIN

MAKEETYIGSIDQGTTSTRFIIYNKKAEIIGSHQVEFTQFCPQAGWVEHDPMEILESVRICVSKTIDKATADGFNIDNGLKAIGITNQRETTVVWSKSTGIPLCNAIVWMDIRTSSICSELEKKLSGGRTHFLETCGLPISTYFSAMKLLWLLQNVKKVKEAVDKGDALFGTIDSWLIWSLTGGINNGLHVTDVSNASRTMLMNIKTLNWDKPTLETLKIPSGILPKVISNSEIIGRVGKGWPFTGVPISGCLGDQHAAM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030997`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030997

Location Chr06:126501934-126504249 (-)

Description Similar to GLPK: Glycerol kinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80460`	Key enzyme in the regulation of glycerol uptake and metabolism.	Arabidopsis NHO1 is required for general resistance against Pseudomonas bacteria.2001 · DOI: 10.1105/tpc.13.2.437 Interplay of the Arabidopsis nonhost resistance gene NHO1 with bacterial virulence.2003 · DOI: 10.1073/pnas.0637377100 Glycerol-insensitive Arabidopsis mutants: gli1 seedlings lack glycerol kinase, accumulate glycerol and are more resistant to abiotic stress.2004 · DOI: 10.1111/j.1365-313x.2003.01989.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030997 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0006071 glycerol metabolic process Biological Process

GO:0006641 triglyceride metabolic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010188 response to microbial phytotoxin Biological Process

GO:0019217 regulation of fatty acid metabolic process Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0019563 glycerol catabolic process Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045471 response to ethanol Biological Process

KEGG gene cross-reference

ath:AT1G80460

hsa:2710

hsa:2713

mmu:14933

rno:79223

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.683

Rank 1 · LXL04_030997 · OH-1004

Nucleus0.227

Rank 2 · LXL04_030997 · OH-1004

Mitochondrion0.099

Rank 3 · LXL04_030997 · OH-1004

Peroxisome0.094

Rank 4 · LXL04_030997 · OH-1004

Cell membrane0.045

Rank 5 · LXL04_030997 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00370.28FGGY_N7-262 aa

PF02782.23FGGY_C270-469 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030997	`PF00370.28`	FGGY_N	7	262	2.7e-70	237.5
LXL04_030997	`PF02782.23`	FGGY_C	270	469	1e-46	160.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M8L4`	Arabidopsis thaliana	Glycerol kinase	75.670%	Swiss-Prot	strong database homology

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