Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2157 bp · LXL04_030932|LXL04_030932|OH1004|cDNA
ATGGCGGCGCCTTCCACTGGATTTGTCTCTAAAGCAAAGACTGCCTTCCACTCTGCCGCTGCCAAGGCCGAGAAAGTCTTCACCGATATTAAAAAATCCGATTCCTCCACCGATCTAGGTTTATATCTTCTCTCTCTATCTATATCTCTGTTTAAATCTCATTTCATTTCAACTGAAGATTCGTATAACCGTATCGCAATCGGAATCGGAATCGCAAAGGAGTTCGGTAAACAATCACCGGTTTCTGAGAAAGACGACTC...
2157 bp · LXL04_030932|LXL04_030932|OH1004|CDS
ATGGCGGCGCCTTCCACTGGATTTGTCTCTAAAGCAAAGACTGCCTTCCACTCTGCCGCTGCCAAGGCCGAGAAAGTCTTCACCGATATTAAAAAATCCGATTCCTCCACCGATCTAGGTTTATATCTTCTCTCTCTATCTATATCTCTGTTTAAATCTCATTTCATTTCAACTGAAGATTCGTATAACCGTATCGCAATCGGAATCGGAATCGCAAAGGAGTTCGGTAAACAATCACCGGTTTCTGAGAAAGACGACTC...
Protein
Download Protein FASTA718 aa · LXL04_030932|LXL04_030932|OH1004|PROTEIN
MAAPSTGFVSKAKTAFHSAAAKAEKVFTDIKKSDSSTDLGLYLLSLSISLFKSHFISTEDSYNRIAIGIGIAKEFGKQSPVSEKDDSPSGVIVTKDKNARRRPEPIKTKQDWQDRFKNIRFGKKGAQEADKSDDIASMSSPIFDENMFLPSLSPFSKESEGSLLGSDNSNMDIIPSAAVLRQLAIGVETTRMVRSMKDLLMSSRDSSPVREKAGLNFSTVKSLVLRDKEDKIDMEFGTDEKVKVVSVISSLLCAGRFFLL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030932 |
|---|---|
| TK1151 ID | TkA07G440150 |
| OH-1004 ID | LXL04_030932 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 90.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030932 |
|---|---|
| Location | Chr06:125355660-125359604 (-) |
| Description | Similar to Rab3gap1: Rab3 GTPase-activating protein catalytic subunit |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0010628 positive regulation of gene expression Biological Process GO:0016236 macroautophagy Biological Process GO:0032482 Rab protein signal transduction Biological Process GO:0034389 lipid droplet organization Biological Process GO:0048489 synaptic vesicle transport Biological Process GO:0050821 protein stabilization Biological Process GO:0097051 establishment of protein localization to endoplasmic reticulum membrane Biological Process GO:1903061 positive regulation of protein lipidation Biological Process GO:1903373 positive regulation of endoplasmic reticulum tubular network organization Biological Process GO:2000786 positive regulation of autophagosome assembly Biological Process GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG31935 dre:777744 hsa:22930 mmu:226407 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13890.12Rab3-GTPase_cat395-547 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030932 | PF13890.12 | Rab3-GTPase_cat | 395 | 547 | 1e-49 | 169.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.