LXL04_030898 | RubberDandelionOmics

Gene overview

LXL04_030898

Reference: OH-1004 Chr: Chr06 Coordinates: 124844827-124845549 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

723 bp · LXL04_030898|LXL04_030898|OH1004|cDNA

ATGAACATGTACCTGCAGCTACAAACCCTTCAACCCGATCATCATCAACACTACCCAAACCCATCGTTCTTCCTTCAAAATCTTCCAAACCCATCTCCACAAACTCGCCATTTTACCTCCGATTACGACCACCCTGCAGCTGCACTTGAAGGCATCGCCGCCGTCGTCGGCGAACATGTTCTCTACGGAAAAAACACAATAACGACGTCGAAGACAGTCGCCGTTAACGTTAACGAAAAAGAACCGAAACCGGTGAAAAA...

CDS

Download CDS FASTA

723 bp · LXL04_030898|LXL04_030898|OH1004|CDS

ATGAACATGTACCTGCAGCTACAAACCCTTCAACCCGATCATCATCAACACTACCCAAACCCATCGTTCTTCCTTCAAAATCTTCCAAACCCATCTCCACAAACTCGCCATTTTACCTCCGATTACGACCACCCTGCAGCTGCACTTGAAGGCATCGCCGCCGTCGTCGGCGAACATGTTCTCTACGGAAAAAACACAATAACGACGTCGAAGACAGTCGCCGTTAACGTTAACGAAAAAGAACCGAAACCGGTGAAAAA...

Protein

Download Protein FASTA

240 aa · LXL04_030898|LXL04_030898|OH1004|PROTEIN

MNMYLQLQTLQPDHHQHYPNPSFFLQNLPNPSPQTRHFTSDYDHPAAALEGIAAVVGEHVLYGKNTITTSKTVAVNVNEKEPKPVKNVSDSEEKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGGKARTNFEIASVFPPSTPSATAEGKTKHGLITSSSKTKCHVVTSVDQLFSNSSPMKTIQKIPANDHDHQTKNMNLELDMNINGGFNKKARTSYMFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030898`
TK1151 ID	TkA07G439860
OH-1004 ID	LXL04_030898
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 99.167 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030898

Location Chr06:124844827-124845549 (-)

Description Similar to ERF084: Ethylene-responsive transcription factor ERF084

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80580`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At3g15210`	Acts as a transcriptional repressor.	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression.2000 · DOI: 10.1105/tpc.12.3.393 Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.2001 · DOI: 10.1105/tpc.010127
`At5g13910`	Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape.	No verified direct reference in this release
`At3g20310`	Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways.	Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses.2005 · DOI: 10.1105/tpc.105.033043

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030898 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G80580

ath:AT3G15210

ath:AT3G20310

ath:AT5G13910

nsy:104222902

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_030898 · OH-1004

Cytoplasm0.066

Rank 2 · LXL04_030898 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_030898 · OH-1004

Endoplasmic reticulum0.019

Rank 4 · LXL04_030898 · OH-1004

Plastid0.012

Rank 5 · LXL04_030898 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP295-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030898	`PF00847.27`	AP2	95	144	3.2e-15	56.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8M5`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF084	50.289%	Swiss-Prot	strong database homology
`O80340`	Arabidopsis thaliana	Ethylene-responsive transcription factor 4	70.968%	Swiss-Prot	weak database homology
`Q9M644`	Arabidopsis thaliana	Ethylene-responsive transcription factor LEP	56.471%	Swiss-Prot	weak database homology
`Q9LDE4`	Arabidopsis thaliana	Ethylene-responsive transcription factor 7	60.759%	Swiss-Prot	weak database homology

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