LXL04_030873 | RubberDandelionOmics

Gene overview

LXL04_030873

Reference: OH-1004 Chr: Chr06 Coordinates: 124409245-124413219 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1131 bp · LXL04_030873|LXL04_030873|OH1004|cDNA

ATGATGCATCTGAACTGTAGTAGCTATAGTTCTCGGTTACTAAAAATGGGGGTTTATCTAAGCACACCTAAAACTGATAAAACATCTGAAGATGGCGAAAATGATAAACTAAAATATGGAGTATCATCCATGCAAGGATGGCGCACATCAATGGAAGATGCTCATGCTGCTTTACTTGACTTGGACACCTCCACATCTTTCTTTGGCGTTTATGATGGCCATGGAGGTCAGGCAGTCTCTAAGTTCTGTGCCAAGTATCT...

CDS

Download CDS FASTA

1131 bp · LXL04_030873|LXL04_030873|OH1004|CDS

ATGATGCATCTGAACTGTAGTAGCTATAGTTCTCGGTTACTAAAAATGGGGGTTTATCTAAGCACACCTAAAACTGATAAAACATCTGAAGATGGCGAAAATGATAAACTAAAATATGGAGTATCATCCATGCAAGGATGGCGCACATCAATGGAAGATGCTCATGCTGCTTTACTTGACTTGGACACCTCCACATCTTTCTTTGGCGTTTATGATGGCCATGGAGGTCAGGCAGTCTCTAAGTTCTGTGCCAAGTATCT...

Protein

Download Protein FASTA

376 aa · LXL04_030873|LXL04_030873|OH1004|PROTEIN

MMHLNCSSYSSRLLKMGVYLSTPKTDKTSEDGENDKLKYGVSSMQGWRTSMEDAHAALLDLDTSTSFFGVYDGHGGQAVSKFCAKYLHLQVLKQEAYSAGDIGTAAQKSFLRMDEMMCGQRGWRELAILGNKMDQFSGMIEGLIWSPRNGDANTINDSWSTEEGPHSNYEGPACGSTACVAIIHNNKLVVANAGDSRCVLSRSGQAYNMSKDHKPDLEVEKERIYKAGGYIHYGRVNGSLNLARAIGDMELKRDKTLPPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030873`
TK1151 ID	TkA07G438020
OH-1004 ID	LXL04_030873
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 96.011 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030873

Location Chr06:124409245-124413219 (+)

Description Similar to At4g31860: Probable protein phosphatase 2C 60

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31860`	Probable protein phosphatase 2C 60.	No verified direct reference in this release
`At2g25070`	Probable protein phosphatase 2C 21.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0651600`	Probable protein phosphatase 2C 58.	No verified direct reference in this release
`Os02g0180000`	Probable protein phosphatase 2C 11.	No verified direct reference in this release
`Os09g0558000`	Probable protein phosphatase 2C 70.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030873 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G25070

ath:AT4G31860

dosa:Os02g0180000

dosa:Os06g0651600

dosa:Os09g0558000

osa:4328505

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.556

Rank 1 · LXL04_030873 · OH-1004

Nucleus0.435

Rank 2 · LXL04_030873 · OH-1004

Cell membrane0.139

Rank 3 · LXL04_030873 · OH-1004

Mitochondrion0.088

Rank 4 · LXL04_030873 · OH-1004

Endoplasmic reticulum0.072

Rank 5 · LXL04_030873 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C38-117 aa

PF00481.27PP2C168-329 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030873	`PF00481.27`	PP2C	38	117	1.1e-72	245.6
LXL04_030873	`PF00481.27`	PP2C	168	329	1.1e-72	245.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ53`	Arabidopsis thaliana	Probable protein phosphatase 2C 60	75.660%	Swiss-Prot	strong database homology
`O81716`	Arabidopsis thaliana	Probable protein phosphatase 2C 21	73.156%	Swiss-Prot	strong database homology
`Q67UP9`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 58	70.278%	Swiss-Prot	strong database homology
`Q6ETK3`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 11	75.000%	Swiss-Prot	strong database homology
`Q653S3`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 70	68.786%	Swiss-Prot	strong database homology

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