LXL04_030833 | RubberDandelionOmics

Gene overview

LXL04_030833

Reference: OH-1004 Chr: Chr06 Coordinates: 123721244-123724459 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1317 bp · LXL04_030833|LXL04_030833|OH1004|cDNA

ATGAGGCTCTTACATTTGGCATTCATTGTTGCTTTAGCATCTGGAGTTGCAGCTATTCTCATCTACATCACCGGCGTTTCTAATCTAAACGGAACACTCAACATTTCGGACGATGAAGTGGAAGCATTGCAGTCGTTGCAAAATGGATTCCAATCGTGTGTGAGGGCCAATGGATTAGGGCTGCAAGCTATCATCGGCAGAGATTACTGCAAAGTTACACTACAGTTTCCCAGTGATACCATCCCCAAATGGAAAGACCC...

CDS

Download CDS FASTA

1317 bp · LXL04_030833|LXL04_030833|OH1004|CDS

ATGAGGCTCTTACATTTGGCATTCATTGTTGCTTTAGCATCTGGAGTTGCAGCTATTCTCATCTACATCACCGGCGTTTCTAATCTAAACGGAACACTCAACATTTCGGACGATGAAGTGGAAGCATTGCAGTCGTTGCAAAATGGATTCCAATCGTGTGTGAGGGCCAATGGATTAGGGCTGCAAGCTATCATCGGCAGAGATTACTGCAAAGTTACACTACAGTTTCCCAGTGATACCATCCCCAAATGGAAAGACCC...

Protein

Download Protein FASTA

438 aa · LXL04_030833|LXL04_030833|OH1004|PROTEIN

MRLLHLAFIVALASGVAAILIYITGVSNLNGTLNISDDEVEALQSLQNGFQSCVRANGLGLQAIIGRDYCKVTLQFPSDTIPKWKDPKTGTVEGLSFEFNLCEAVATWEQVRNSTTILTKEFIDALPNGWTDYAWKRINKGILLNSCANKTLCMEKLSLVLPETPPYVPRQFQRCAVIGNSGDLLKTKFGKEIDSYDAVLRENGAPIQNYTEHVGQKSTFRLLNRGSAKALDKVAELYETGKEVLIVKTTIHDIMNKMIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030833`
TK1151 ID	TkA07G435180
OH-1004 ID	LXL04_030833
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030833

Location Chr06:123721244-123724459 (-)

Description Similar to SIA2: Sialyltransferase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48820`	May participate in glycosyl transfer during cell-wall rhamnogalacturonan II biosynthesis.	The Arabidopsis thaliana putative sialyltransferase resides in the Golgi apparatus but lacks the ability to transfer sialic acid.2009 · DOI: 10.1111/j.1438-8677.2008.00138.x The cell wall pectic polymer rhamnogalacturonan-II is required for proper pollen tube elongation: implications of a putative sialyltransferase-like protein.2014 · DOI: 10.1093/aob/mcu093
`At1g08660`	Required for normal pollen grain germination and pollen tube growth.	MALE GAMETOPHYTE DEFECTIVE 2, encoding a sialyltransferase-like protein, is required for normal pollen germination and pollen tube growth in Arabidopsis.2010 · DOI: 10.1111/j.1744-7909.2010.00963.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0118400`	May possess sialyltransferase-like activity in vitro.	No verified direct reference in this release
`Os11g0572400`	May possess sialyltransferase-like activity in vitro.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030833 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001574 ganglioside biosynthetic process Biological Process

GO:0001576 globoside biosynthetic process Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009247 glycolipid biosynthetic process Biological Process

GO:0009312 oligosaccharide biosynthetic process Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0097503 sialylation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G08660

ath:AT3G48820

dosa:Os02g0118400

dosa:Os11g0572400

rno:64442

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.596

Rank 1 · LXL04_030833 · OH-1004

Extracellular0.149

Rank 2 · LXL04_030833 · OH-1004

Endoplasmic reticulum0.138

Rank 3 · LXL04_030833 · OH-1004

Cell membrane0.132

Rank 4 · LXL04_030833 · OH-1004

Cytoplasm0.125

Rank 5 · LXL04_030833 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00777.24Glyco_transf_29163-250 aa

PF00777.24Glyco_transf_29282-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030833	`PF00777.24`	Glyco_transf_29	163	250	2.1e-28	100.2
LXL04_030833	`PF00777.24`	Glyco_transf_29	282	319	2.1e-28	100.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RY00`	Arabidopsis thaliana	Sialyltransferase-like protein 2	79.196%	Swiss-Prot	strong database homology
`Q8VZJ0`	Arabidopsis thaliana	Sialyltransferase-like protein 1	48.800%	Swiss-Prot	moderate database homology
`Q6ZH45`	Oryza sativa subsp. japonica	Sialyltransferase-like protein 4	72.665%	Swiss-Prot	strong database homology
`Q2R2B1`	Oryza sativa subsp. japonica	Sialyltransferase-like protein 5	49.457%	Swiss-Prot	moderate database homology

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