LXL04_030829 | RubberDandelionOmics

Gene overview

LXL04_030829

Reference: OH-1004 Chr: Chr06 Coordinates: 123680564-123686372 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5220 bp · LXL04_030829|LXL04_030829|OH1004|cDNA

ATGGCGTCGACGACTACGGCGGCGAGGGAGCATGTGGCCGAGATCAGGAAGACGAAGTTCTCCATCGGCGGAGAACCGAATCCGCTAACGGAGGATCTTCATCAAGCGGTTAAAAATCTGTCTGCCGAGCTTTATGCCAAGGATGTTCACTTCCTCATGGAACTCATCCAGTTCGTGGTGTTCACAAATCACAGTTATGTTTTCGCTAACACATTTTGTGCTTCTGCTCCCGATGTTGCGGCGAACGCGGAGGATAACGA...

CDS

Download CDS FASTA

5220 bp · LXL04_030829|LXL04_030829|OH1004|CDS

ATGGCGTCGACGACTACGGCGGCGAGGGAGCATGTGGCCGAGATCAGGAAGACGAAGTTCTCCATCGGCGGAGAACCGAATCCGCTAACGGAGGATCTTCATCAAGCGGTTAAAAATCTGTCTGCCGAGCTTTATGCCAAGGATGTTCACTTCCTCATGGAACTCATCCAGTTCGTGGTGTTCACAAATCACAGTTATGTTTTCGCTAACACATTTTGTGCTTCTGCTCCCGATGTTGCGGCGAACGCGGAGGATAACGA...

Protein

Download Protein FASTA

1739 aa · LXL04_030829|LXL04_030829|OH1004|PROTEIN

MASTTTAAREHVAEIRKTKFSIGGEPNPLTEDLHQAVKNLSAELYAKDVHFLMELIQFVVFTNHSYVFANTFCASAPDVAANAEDNEYPEGVDPSLEFVITSKDITNTGAPATLLVFNNEKGFSMKNIESICSVGRSTKKGLRKRGYIGEKGIGFKSVFLITSQPYIFSNGYQIKFNEKPCEHCNVGYIVPEWVEGDPTLSAIQTVYGSTTPLPTTTLVLPLKPEKVKPVKDQLSSVHPEVLLFLAKIRKLSVREENENP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030829`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030829

Location Chr06:123680564-123686372 (+)

Description Similar to NOV: Protein NO VEIN

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13750`	Essential protein required for cell fate determination during embryogenesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030829 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001708 cell fate specification Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010305 leaf vascular tissue pattern formation Biological Process

GO:0019827 stem cell population maintenance Biological Process

GO:0048364 root development Biological Process

GO:0090084 negative regulation of inclusion body assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0030544 Hsp70 protein binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT4G13750

mmu:50720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.552

Rank 1 · LXL04_030829 · OH-1004

Cytoplasm0.492

Rank 2 · LXL04_030829 · OH-1004

Mitochondrion0.066

Rank 3 · LXL04_030829 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_030829 · OH-1004

Endoplasmic reticulum0.037

Rank 5 · LXL04_030829 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25794.2SACS102-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030829	`PF25794.2`	SACS	102	171	1.1e-10	42.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JTS8`	Arabidopsis thaliana	Protein NO VEIN	30.361%	Swiss-Prot	weak database homology

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