LXL04_030693 | RubberDandelionOmics

Gene overview

LXL04_030693

Reference: OH-1004 Chr: Chr06 Coordinates: 120903106-120904420 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_030693|LXL04_030693|OH1004|cDNA

ATGGCTAATTCATCCTTACTTCCATTAATCATCCTCCTCCTTTCCTCCGCCGTTATAACTTCCAGAAAAACCCAACTTCCGCCGGCATCACCTCCCCTTACACCCAACTACTACGCCAAATCATGCCCACGGTTCCACGACATCCTTCAAAACGTTGTCGTACCAAAACAAACATCCCACcccaccaccgccgccgccacccTCCGTCTCTTCTTCCATGACTGCATGGTCGGCGGCTGCGACGCCTCCGTCCTCATCGC...

CDS

Download CDS FASTA

1041 bp · LXL04_030693|LXL04_030693|OH1004|CDS

ATGGCTAATTCATCCTTACTTCCATTAATCATCCTCCTCCTTTCCTCCGCCGTTATAACTTCCAGAAAAACCCAACTTCCGCCGGCATCACCTCCCCTTACACCCAACTACTACGCCAAATCATGCCCACGGTTCCACGACATCCTTCAAAACGTTGTCGTACCAAAACAAACATCCCACCCCACCACCGCCGCCGCCACCCTCCGTCTCTTCTTCCATGACTGCATGGTCGGCGGCTGCGACGCCTCCGTCCTCATCGC...

Protein

Download Protein FASTA

346 aa · LXL04_030693|LXL04_030693|OH1004|PROTEIN

MANSSLLPLIILLLSSAVITSRKTQLPPASPPLTPNYYAKSCPRFHDILQNVVVPKQTSHPTTAAATLRLFFHDCMVGGCDASVLIASNAYNKAERDQDINESLAGDGFDIVTRIKTALEIECPGVVSCSDILAVATRDLVIQVGGPHYDVKLGRKDGLESKASNVEGRLGRANMTMDKIIKIFEGHGYTTRELVALMGGGHTIGFAHCKEFESRLFGPKPDPSVHPKLVKKLKAMCANSSSDPTLSAYLDPISAGNFDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030693`
TK1151 ID	TkAUNG021970
OH-1004 ID	LXL04_030693
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	70.000
Protein coverage (%)	TK1151 91.146 / OH-1004 71.387 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030693

Location Chr06:120903106-120904420 (+)

Description Similar to PER41: Peroxidase 41

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17690`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g47000`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g24110`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g40150`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At3g28200`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030693 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009044 xylan 1,4-beta-xylosidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0140825 lactoperoxidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G24110

ath:AT3G28200

ath:AT4G17690

ath:AT5G40150

ath:AT5G47000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.353

Rank 1 · LXL04_030693 · OH-1004

Extracellular0.247

Rank 2 · LXL04_030693 · OH-1004

Cytoplasm0.127

Rank 3 · LXL04_030693 · OH-1004

Endoplasmic reticulum0.125

Rank 4 · LXL04_030693 · OH-1004

Cell membrane0.094

Rank 5 · LXL04_030693 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase51-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030693	`PF00141.29`	peroxidase	51	295	1.8e-74	251.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23609`	Arabidopsis thaliana	Peroxidase 41	60.135%	Swiss-Prot	strong database homology
`Q9FJR1`	Arabidopsis thaliana	Peroxidase 65	57.241%	Swiss-Prot	strong database homology
`O48677`	Arabidopsis thaliana	Peroxidase 6	55.102%	Swiss-Prot	strong database homology
`Q9FL16`	Arabidopsis thaliana	Peroxidase 63	53.401%	Swiss-Prot	strong database homology
`Q9LHA7`	Arabidopsis thaliana	Peroxidase 31	53.061%	Swiss-Prot	strong database homology

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