LXL04_030612 | RubberDandelionOmics

Gene overview

LXL04_030612

Reference: OH-1004 Chr: Chr06 Coordinates: 119548879-119552472 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · LXL04_030612|LXL04_030612|OH1004|cDNA

ATGGCTACTGAAGAAGAATCATCGACTGTATTTAGCTTGGAAGGAATCGAAGACATCGAGGACTTTGTTCCGGGAAACGAAGACGAGTCTCTAGACACAGGGCGTTCTACTCATCTTCTCGATCTAATGAAAAAGGCCAACAAAGCATTCAGAGAGAATCGTTATGAAGAGGCAGTCAATTACTACTCTAGAGCTCATAATATCAAGCCAGATGATCCTGTAATTCTTAGCAACCGATGTGCTGCTTACCTCAGAATTGG...

CDS

Download CDS FASTA

1458 bp · LXL04_030612|LXL04_030612|OH1004|CDS

ATGGCTACTGAAGAAGAATCATCGACTGTATTTAGCTTGGAAGGAATCGAAGACATCGAGGACTTTGTTCCGGGAAACGAAGACGAGTCTCTAGACACAGGGCGTTCTACTCATCTTCTCGATCTAATGAAAAAGGCCAACAAAGCATTCAGAGAGAATCGTTATGAAGAGGCAGTCAATTACTACTCTAGAGCTCATAATATCAAGCCAGATGATCCTGTAATTCTTAGCAACCGATGTGCTGCTTACCTCAGAATTGG...

Protein

Download Protein FASTA

485 aa · LXL04_030612|LXL04_030612|OH1004|PROTEIN

MATEEESSTVFSLEGIEDIEDFVPGNEDESLDTGRSTHLLDLMKKANKAFRENRYEEAVNYYSRAHNIKPDDPVILSNRCAAYLRIGHFLKHRPASASELRPFSGLDPTTHASLALKDAENFMNLQTDSIKAYILKANALILLERFELSRDVILTGLQLDDSSNALKNLERFTSNIFGKRTRKNGQTPRTDDFDCTLCFKLLYDPITTPCGHTFCRSCLFQSMDQGNRCPLCRTVLFISPRTCAISVTLKNIIERNFPEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030612`
TK1151 ID	TkA07G415290
OH-1004 ID	LXL04_030612
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_030612`
Location	Chr06:119548879-119552472 (-)
Description	Similar to LONRF1: LON peptidase N-terminal domain and RING finger protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030612` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0043021 ribonucleoprotein complex binding Molecular Function GO:0051787 misfolded protein binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference	hsa:164832 hsa:91694 mcf:102135813 mmu:244421 mmu:74365 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598

Rank 1 · LXL04_030612 · OH-1004

Nucleus0.368

Rank 2 · LXL04_030612 · OH-1004

Mitochondrion0.116

Rank 3 · LXL04_030612 · OH-1004

Peroxisome0.086

Rank 4 · LXL04_030612 · OH-1004

Cell membrane0.057

Rank 5 · LXL04_030612 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13414.13TPR_1150-87 aa

PF13920.13zf-C3HC4_3193-234 aa

PF13639.13zf-RING_2194-233 aa

PF13923.13zf-C3HC4_2195-232 aa

PF00097.32zf-C3HC4195-232 aa

PF13445.13zf-RING_UBOX195-230 aa

PF15227.13zf-C3HC4_4195-232 aa

PF14634.13zf-RING_5195-234 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030612	`PF13414.13`	TPR_11	50	87	3.5e-06	27.3
LXL04_030612	`PF13920.13`	zf-C3HC4_3	193	234	1.5e-08	35.0
LXL04_030612	`PF13639.13`	zf-RING_2	194	233	2.4e-08	34.8
LXL04_030612	`PF13923.13`	zf-C3HC4_2	195	232	2.7e-13	50.2
LXL04_030612	`PF00097.32`	zf-C3HC4	195	232	1.7e-09	38.1
LXL04_030612	`PF13445.13`	zf-RING_UBOX	195	230	1.3e-08	35.4
LXL04_030612	`PF15227.13`	zf-C3HC4_4	195	232	8.3e-07	29.7
LXL04_030612	`PF14634.13`	zf-RING_5	195	234	9.3e-07	29.4
LXL04_030612	`PF02190.23`	LON_substr_bdg	279	476	1.4e-22	81.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card